Array 1 128438-127555 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDAZ01000006.1 Escherichia coli strain VRES0108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128437 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 128376 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 128315 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 128254 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 128193 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 128132 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 128071 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 128010 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 127949 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 127888 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 127827 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 127766 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 127705 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 127644 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 127583 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155508-154137 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDAZ01000006.1 Escherichia coli strain VRES0108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155507 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 155446 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 155385 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 155324 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 155263 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 155202 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 155141 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 155080 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 155019 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 154958 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 154897 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 154836 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 154775 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 154714 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 154653 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 154592 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 154531 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 154470 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 154409 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 154348 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 154287 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 154226 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 154165 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //