Array 1 47244-47452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNT01000014.1 Veillonella montpellierensis DNF00314 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47244 28 100.0 33 ............................ TAAAATGCGCCAGTAACTACCCTAAAATGCGCC 47305 28 96.4 32 ........................G... ATGTCATGCCCATGAAGCCGTAAGCGGTCAAC 47365 28 92.9 32 A..........................T GTTGAGGCTTCAACTCACCACTATGATATGCG 47425 28 71.4 0 ..............GAA.CAA...C..G | ========== ====== ====== ====== ============================ ================================= ================== 4 28 90.2 33 GTTAACTACCGCATAGGTAGCTTAAAAA # Left flank : GGCCCCTAAAGCAGTGACACCGACACCAAGCACACTGGCTCCGAGTGCTACATGATCGCCTACTGTGCGATGCGACTTGTCTTTCGCCCAATACCCTACCGCCGTACTAGCGCAAACAGCAAGACTATTAGCTAACGATTTTTTCGATAAAAATGGTTGTCTCATAAGAACCTCCTTAGGAACACCTATGCTACTATCTCTGCTATATATATTACCATGATTGTACAATCCAGGTTAGACAACTCGACCCCACATGGAAAGATGCCATTGTATGGATTAGTGCGCATAATATGATTATTCTTTTAACAATTCATGGGGTTAGATGTATAGCACGTTTTGTCCTATACCCCTATATAGTTATAGTATACACTAGAGACAAGTGAAAGTGAACGCTCTATGCTAACGTTCCTATATCCATACGTAACCATTCGATGTGTACCCGTATCATGTATCGCAAAGGTACTTAGAGAAGCCATATTTATAGCAGTACGCGTTATATC # Right flank : GGATATCCTTACATGCATAAAAACTACTCCATGTCTACCCCCCCTATCGATAGCTTTCACCATAGGCCCCATTGATTAAAAACTTCTACTTGTTATACCGCCCTCGCTGAATCCATAGGTGGTCACTCGCTAGTCCCCTTACCATATATCGCATCAGTAAGTAAAAGTATATCCTGACATTCATAAAAAACTAATTTTCTAACCCTCTATCGCTAGCTTTCACCATAGGCCGCCCATTGATTAAAACTTCTACTTGTTATACCGCCCTCGCTGAATCTGTGGTATACTACTAACGGAGATAGTATTCTGTGAAACTATACTCTATCTGACACATTACTTTATACCAATTTACAAACAGAGTCGCCCTTGCACAATCTACACGATGTGAACAAGATCGCTTCTCTCATAGAGTATACAAAGATGTACCTACCGCCTTAGGCCACTATACTGTCATAGTTACCTACGGCATGGCAATAGATAGGTCGATTGTAGGTGTTTCT # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGCATAGGTAGCTTAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8689-8481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNT01000044.1 Veillonella montpellierensis DNF00314 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8688 27 75.0 32 TGCCCA...-.................. ACGTGTGACTCTGTACTTACTCGACTTCCTAC 8629 28 100.0 33 ............................ TCTAGATAATAATAATCTAACTAAATCATCGCT 8568 28 92.9 32 .C.................A........ ACATGTCTGCAAAGAAATTATATACGGCGTTT 8508 28 71.4 0 .................A.TA.GTA.TT | ========== ====== ====== ====== ============================ ================================= ================== 4 28 84.8 33 GTTAACTACCGCATAGGTAGCTTAGAAA # Left flank : TGAACGATATATTAAATATCTTGCCAATATTCGGTTAGAGGCTATCGGTCTTCCTCACTTATATCCTGATATTACCACTCATCCTATGGAATGGATTGAAGGTTTTTCCAATCTAAATAATACGAAAACTGATTTCTTTGAAGCCCGTGTTACCAATTATACGAAAGCGGCGGCCTTTGATTTTGATGATTTAGTGTAATACTTTATCACAGGCTTAAACGGCTATCACCAAGAAAATCATTTAAAAATACTGCCTACCCTATCTAGTATGGGCAGTATTTTTTATTCCTTTTTCCTACTTATCTATGATTTCTAATTGCTAATCTTCAAAAATCTATCGTTACCAGTCGTACGGTCACACCATCAGCCTAAACAATGGAGCGTCTTACGATTATTAATAGTAAAAATACTGTCAGCATGATGATCTACAAAATCAAGCTAACCTTGTCTAATTCATTCGACTGTATATAAGATACAACGTACCTCATTCCTATGTCGTG # Right flank : TTCTAGGTTTGTACATAGGTTATGTTTGTGAAAATGATATTTATTGTTATATTTTATGAAAAATACTTGCTATTTTTTTACCAAGAGTTATATAATAAACATATCATATTAAGAAGGGAGTTATCATGATGAACAGAATCGTGTCTAATGCAATACAATACAATAGTGCATACGCATACTTTTGGTACTTTACTCAGTCTACGGGTAAAGGCTATTTGAGTTGCACTGATTCAGTTCTGACAGTGATAGCTTAATATAGTAAAGAGCTACCCGTAATTGGGTAGCTCTTTTTTTATTATCCCTAGCAAGCCTTGCTAGCGTCCCCTGTTAATAAGAGAGAGTCATGAGAATCTATGTCGATTAGTACGCATTCTTCACATACACTACGCCTATTCGTGGCCTACCTATCTCATAGGTAACAGTGTCCGTGATGAAACGTAAAATCGTCGAAGCAGCCATCACACATATGGGAGGAGAAAATTATGATTATTACATTACAC # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //