Array 1 20237-20025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHW01000013.1 Gilliamella apicola strain N-9-4 NODE_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20236 29 100.0 32 ............................. CCATTTCACTAGATAACCTATTAGTTAAAACC 20175 29 100.0 32 ............................. AATTTGAAACGTTCCCGATATTGAGCTGATTT 20114 29 100.0 32 ............................. ACGAATCCGACGGCGATGGCGAGTGATTTTAA 20053 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAGATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTTTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTCAAACAGCCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGCCAACATAGTAACTTTTTGCTATTTAATAAATCCTAATTATATATTTCAAGGTATTATTATTTTTAATCTAATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTATCTTTAATTTAAATTAACTAAATAAAAACATAGTGTTATAAATACTAATTTTATTGCAAATTAACCCCAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTAATGAAATGGATTACATCCCGTGGATAGCGGTATCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGCGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGACATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1501-1228 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHW01000014.1 Gilliamella apicola strain N-9-4 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1500 29 100.0 32 ............................. GACAAGGCGTACAAGCTTTCGGACGGGCGAGG 1439 29 100.0 32 ............................. CGTAATAGACCCAACCGATGTTGCAGCAACAA 1378 29 100.0 32 ............................. GTTTAGATAGACTCGATGCTTCGTCTAAAAGT 1317 29 100.0 32 ............................. TAAAAATATGTTCCCTTGATATTGACACCTTA 1256 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCAACCGATTCGTTAATATCAGCTTAATAACATTAATTATGCTTTCAATAAAAATATTGGTTAAATCAATATGATTTGATTAGAAAATAACCTAAAAAGTTGATAAAAATTTTAATGTTGCTATTTTAATTATAAAACAAACAGTTATAATTAGAGTGTTCCCTGTATACATAGAGATAAACCGTCGATGTGTTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTCTGTATTTCATTGTTTACTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAATTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTGATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ATAGTAGGCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTGTAAAAAAAATATTGCTACCGCCATCGACCAGTTGAATGATTTGTGAGAAAAAACAAAATCGCCTGATGAAAAGCAACTATACCCTATTACCATTACAAAATTGCAGGGCGCGCAAAGGTGGGCAGTCAAGGCCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATACAACTAATATGTATAAAATATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGCGGTAGGATTATCACAGCGTCAGGGCAAGGGTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGATTTGGTTTCCTGTCCTAAATGTAGCAGTACTGGCAGAATCATAGAAGGGGCAAACGATTTTATTATCGATGGCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16782-17422 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHW01000043.1 Gilliamella apicola strain N-9-4 NODE_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16782 29 100.0 32 ............................. TCTTGCTGCTCTTTAATTGATTCATCCCGTGA 16843 29 100.0 32 ............................. ACAGAGGATGAGCTACGGGCTGTTTACGCAAA 16904 29 100.0 32 ............................. AAATCAAATTTTACAGTATTATTTTGAGTCAT 16965 29 100.0 32 ............................. GACGAATTAGGGACGCCTATCAGAAAATTATG 17026 29 96.6 33 ............................A GATATCGGAATCCGTTTATCTCGTTGTTACTGC 17088 29 100.0 32 ............................. CAATGCGGAATTAATAAAATCAACATCTTGCG 17149 29 93.1 32 ............CA............... TGGGTTACAGAACATCAAGAAAACATAAAGGA 17210 29 93.1 32 ............CA............... CTCTGTTTGAGTTAGGAATTTTGCTAATGAAT 17271 29 93.1 33 ............CA............... TGGTGCAGACCTGAATAATGCGTCCCTTTATAG 17333 29 93.1 32 ............CA............... GCACTGCAGCAGATATCGGCGCCGAATCATAT 17394 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TCAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAGATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGTGTAATTTTGATAACAACAAAGCACTAAAAACATCTCAATAAAACTTATTATTTTTTAACTGAATGAAAAATATAAGCTTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAATCATAATGTTATAAATACTAATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGGAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GCTTATTTAGCAACATAATCAATGGGTCCATATTGGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCATAGTGAGATAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGTATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTATTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7085-6690 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHW01000064.1 Gilliamella apicola strain N-9-4 NODE_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7084 29 96.6 32 ............T................ GGAAAAATTATAAACGGAATATAGCTGACAAA 7023 29 96.6 32 ............T................ GGTATTATCAGTGAAGAGGACTGGCGTGAGAA 6962 29 96.6 32 ............T................ TGGTAACGAACGATTACCGCTAACAACTAATG 6901 29 100.0 32 ............................. AATAGTACAGGAGATATAAAATGGAAAAAAAT 6840 29 100.0 32 ............................. AAACCCTTTATCACGATTAATAGTGCGTTCAT 6779 29 100.0 32 ............................. GCGCATCGGTATTTGACAGGGCGTTCATTTCA 6718 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAGGATAAGTTAAATTATTAGGTCCTCTAAAAGATGAAATGTAAAGCTATAGGTTGTTGCAATCACGCATACTCATCAACTGGTTATTGCTATCGACATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTAAACACAGGGATAAACCGCGTTACAAATGAACCTGTAAAACTAACCGAATGTGTTCCCTGTATATACAGGAATAAACCACTGATGCGTCAATTTACATAGTATTTTTTTGCTATTCAAAAATCATAATTCTAAATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAACTTTAATTACTTAAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGGAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGT # Right flank : CAAATCCATCACAAATCCATCACAAACAGCCCTCGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGAAAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAGGAAAATAATCTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //