Array 1 2002-454 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBON01000047.1 Klebsiella pneumoniae strain ARPG-380 map unlocalized plasmid unnamed1 contig47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2001 29 100.0 32 ............................. GGCTTCCGGGTGACGGGCGTACAGGGTGAGCA 1940 29 100.0 32 ............................. CGATTACTGAGTCGTTCACGAACCGGCCACCA 1879 29 96.6 32 ........T.................... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 1818 29 100.0 32 ............................. TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 1757 28 89.7 32 .....-......CA............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 1697 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1636 29 86.2 32 ......T.....CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 1575 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 1514 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 1453 29 93.1 32 ............CA............... GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 1392 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 1331 29 100.0 32 ............................. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 1270 29 93.1 32 ............CT............... ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 1209 29 93.1 32 ............CT............... TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 1148 29 93.1 32 ............CT............... GCAGCGGCCTGATGATGATCGATATGAACGGC 1087 29 89.7 32 ............CA...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 1026 28 93.1 32 ..........-..A............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 966 29 100.0 32 ............................. TAATTCAGGAAATGAATTCTAAAATTGAATCT 905 28 86.2 32 .........T-.CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 845 29 93.1 31 ............CT............... TGACTTTTATGAAATTTTTTCTTAAAAAACT 785 29 89.7 32 .........T..CC............... CGGTAACGCAAATATGATCCGATGTCGTCAGG 724 29 93.1 32 ............CA............... GACAGTCACTATGTTCGGTATGTTTAAAAAGA 663 29 93.1 32 ............CA............... TTACTTTTAAAATAAATGTCTATATTGGCTCA 602 29 96.6 32 .............C............... TTCGAGCACGGCCATGTGGAACTGTTCAGTGT 541 28 89.7 32 ..........-.CA............... TTACGCATTGTGATCGGGATTCGCTTCAGACG 481 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 93.8 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCTGGATAACCCACATTCTGCCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGGTAAATTCATGCCTTGGGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGACAGGGCGGTATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGTTTATATATGGGTCTTCCCCGATCATGGTGGGAAGGCTCAGAACGCCATATTCAGCTTTCCGTAGTGGAACATCACCCCCAGTTTAAAGCGCTCCCGGTTTCGGTATCCCCTGGCTTTTATCCTCAGCAGCCTG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 193948-191542 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBON01000035.1 Klebsiella pneumoniae strain ARPG-380 contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193947 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 193886 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 193825 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 193764 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 193702 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 193641 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 193580 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 193519 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 193458 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 193397 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 193336 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 193275 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 193214 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 193153 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 193092 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 193031 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 192970 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 192909 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 192848 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 192787 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 192726 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 192665 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 192604 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 192543 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 192482 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 192421 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 192360 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 192299 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 192238 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 192177 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 192116 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 192055 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 191994 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 191933 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 191872 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 191811 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 191750 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 191689 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 191628 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 191570 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //