Array 1 1-544 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGT01000020.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 WGS0042_contig_20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1 36 100.0 28 .................................... TTTTGGTCTACTTTAGTAAGTTTTACCC 65 36 100.0 27 .................................... GTATTTAAGTTTTAGATCTTCAAATGT 128 36 100.0 28 .................................... GGATTGAATTTGCAACACTTGAAAAACA 192 36 100.0 26 .................................... TTATGGTAAAGAGTTCCAACTTAAAG 254 36 100.0 27 .................................... AATCGTAGTACTTCCTAACCAATTTAT 317 36 100.0 29 .................................... GCGTAGTGTGCATCTTGAGCCGATAATAG 382 36 100.0 28 .................................... ATTCAATGGCACTCATACCTAATTCCTT 446 36 100.0 27 .................................... TACTAAAAAGCTAATTAGTATTCCAAT 509 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 100.0 29 GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Left flank : | # Right flank : | # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 47-1289 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGT01000021.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 WGS0042_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 47 36 100.0 26 .................................... TGGTACCGACACTCACGGAATAAAAA 109 36 100.0 27 .................................... GTTGATCTTGCCACTTCAACGAATTAA 172 36 100.0 28 .................................... GTCAATTGGCTATAATGTTTAAATTGAA 236 36 100.0 28 .................................... GCTGGGTATCACGGTTGGGTAAAAACTA 300 36 100.0 28 .................................... ACGTTATTAAAATGTTTGCAGGAATTTT 364 36 100.0 28 .................................... CGTTAGCTTCAATCACATTTCCTTTGAT 428 36 100.0 28 .................................... GGATGGTGTACTTTTAGCATATCTTCTT 492 36 100.0 29 .................................... TAGTTGAAAACGTTGCTAAAGTGAATTAT 557 36 100.0 27 .................................... AATTGTGTGTACTGGACTACGCTCATT 620 36 100.0 28 .................................... TCCCCTGCAATTTCTCGGAACTTTCTCG 684 36 100.0 26 .................................... CTCTTGGATGAATGCTTGTTTTTTTA 746 36 100.0 27 .................................... TGGCACATTTTACCAAAGAACCTTCGT 809 36 100.0 27 .................................... GAGTTAAACTATTACAGTCCAACCAAG 872 36 100.0 28 .................................... ATAGTACAATACCTGTCGCTAAAGTTGA 936 36 100.0 28 .................................... AATATCTATGGGCGGCCAGCATCAGACT 1000 36 100.0 27 .................................... CAAAAACAATTCAAAGATCATCTTGGA 1063 36 100.0 29 .................................... AAACGCCTTTGTAAGTGAAATTAGCATCG 1128 36 100.0 27 .................................... CTTGAAACTATACAGAACCTAAAAACG 1191 36 100.0 27 .................................... GTTGATGATGCTACGGGCAGGCATCAC 1254 36 94.4 0 ..................................TA | ========== ====== ====== ====== ==================================== ============================= ================== 20 36 99.7 28 GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Left flank : TTTCTACTATTGTAGATTTCTCATGTTTTATTTATTTTTTAAAAAAG # Right flank : AGAAAATGCCACAGATGCACAGATGTTTTTTTTTAAATCTCGAATTTCTACTATGGGGTTGTGGTTGATGATTGGTGGTTTGTGGTTGATGGTTGATGGTTGATGGCTGATGGTTGATGGTTGTTGGTTGATGGTTGTTGGTTGATAGCTGAAACTTGAAACTTGAAACCTGAAACTTGAAACTTCTAACCTCTAACTTCTAACTTCTAACCTGAAACCAAAGAGTGCCGTCAAAAGTTTGGCTATCGGAGCCATTTTTTGGCTTTTTCTTGAATGATGGCGGCTACTGTTCTGTTTTCGATTTTGCTTTCGAGCCACGAAATGATGTCTAAATACAAAAAGGCTCTTTTTTCATAAGGGTGGTTTTCGTATTGCAACAATTGGGTGTGTAGTTTTTTAAACGCTGATTTGAGTTCGCTTGGGTATATTTTGTCTAAATTTTTCAAAAACTTGATCATTTCTTTCTGAACTTCGTGCAAATCGTTCATTTTGATCAAATA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 18136-19651 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGT01000055.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 WGS0042_contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 18136 36 86.1 78 .AAT.TA............................. CAATAGTACAAACACAATCATCACTGCCTTGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGAGTGTTTGT 18250 36 86.1 78 .AAT.TA............................. TGGTGCTACTTTTGGAGCAATAGTGGCTGGGTTGTGGTTTACAAACACCAAAATAATATTTTTTATAGGTGTGTTTGT 18364 36 86.1 30 .AAT.TA............................. TGAATGGATTCTTGCTAGAGAAAAAGACAT 18430 36 100.0 30 .................................... TGAATCCATTGAATCAATGTCCGCAGATAC 18496 36 100.0 30 .................................... TGCACGGATAACCGAAAAAATAAGTCTGAT 18562 36 100.0 30 .................................... CTTTGCCTTCAAATGAATTAATGGCATCAA 18628 36 100.0 30 .................................... AGTTTCTAAATTGAAAGATTTAGAACACTT 18694 36 100.0 30 .................................... AATGGTTAAGACGGCTTGGAGGCTCTGAAA 18760 36 100.0 29 .................................... TACATTGGAACTGCACCGTGTTAGCAGTT 18825 36 100.0 29 .................................... CGTACTTTTAAGGAGCAGACTGATTTATG 18890 36 100.0 30 .................................... AGATAGAAGCTACATCAGCTTATTTCGACA 18956 36 100.0 30 .................................... AACGCAGTAATAGTTAAATCAGACCTTGAT 19022 36 100.0 30 .................................... TTTTGTACCTGTGGAATTAAAGTTACCCCG 19088 36 100.0 30 .................................... AATGCAACAAAAGGAATTTCAAACCAAAGT 19154 36 100.0 30 .................................... TCAAATATGAAAATATCCAAAGCAAGAAAA 19220 36 100.0 30 .................................... GCATTTTTCAAAACAAAATAAGAAAGGCTT 19286 36 100.0 30 .................................... TTATCTCGTGTGAACTGGATGAGACCGACA 19352 36 100.0 30 .................................... TTTACAGCCGATAAGTTGGAAAGCATTTCC 19418 36 100.0 30 .................................... TTTACAGCCGATAAGTTGGAAAGCATTGCC 19484 36 100.0 30 .................................... ATAGTAAGCCTAATTTTTCTAGGCGTGGCA 19550 36 100.0 30 .................................... GTTTTGAATTTAAAAGAAAAAACCCTTAAA 19616 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================== ================== 22 36 98.1 35 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Left flank : TTTCGCTCAACTTATTACATTGGAATGACAAATAACTTGGGATTGCGATTACTTCAACATAAAGAAAATATAGAAAAAGGAATTAAAACATTTGCCTCTAAATACAATATTGAGTTTTTGGTATTTTACGAAAAGTTTACTTGGGTTCAAAAGGCAATAGAAAGAGAAAAAGAATTAAAAGGGTGGAAAAGAGAAAAAAAATTAGAATTAATTAGAAATTTTAATCCAAATTTTGAATTTTTAAACGATCGATTTATGTAAGAAAATAAATGATTCGATTTGTCATTCCGACGAAGGAGGAATCACATAACATGAGTAACAAATGCGATTCCTCCTCCGTCGGAATGACAAAAAGGAGACAAAAAGTTCTTTGACATACGTTTTCATGGTCTTAAACAGCCAAACCACAAAGACGATGTAAGAGTAATCTGTGCATCAGTGGCAATTTTAAAGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGTGTGTTTGT # Right flank : GAGTTGGCTTGTTGCCTTCTGATATTCAAGGGATTAATTGTAAATATCGTTATAAAAAATGCCTCTTTATAGGACTGATAACCCTATATTGAGGCATTTTTTGTTTTCTAAAACAGCTCTAGCTGTACAGGCATTGGTACTTTTGGCAACGGAGCTTGGCCCCAATAATTCATAATATTGCCAAACTGTTTGTCGGTTATCCGTACAACACTCACCTTGCCTAGTGGGGGCAACAATTGTACGATACGTTTTTCGTGTACGTCGGCACTCTCGCTACTGGCACAATGTCTTGTATATACAGAATATTGCATCATCGTAAATCCGTCGTTCAATAATTTGTTTCTAAAAACCGAGGCATCTTTACGGTTTTTTTTTGTTGCTGTGGGCAGGTCAAAAAATACAAACAACCACATTATCCGATATCCGTTGAGTTCCATAACTTGGCATATTTTATTTTTTTGCGTTCGCCCGTATAACATTGTTGTAGCGAGCTGGCTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //