Array 1 12598-11165 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADJ01001286.1 Herbaspirillum sp. B501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12597 29 100.0 32 ............................. CCCGGACAAAATGCGATTGTGCAGCGCATTCG 12536 29 100.0 32 ............................. ACTGCGGCCGTGGGCGACTCGATGGACTACGC 12475 29 100.0 32 ............................. GAGCATTGAGGATGTACGACCCGACGAACTCG 12414 29 100.0 33 ............................. TTCGATGGTGCGGGATTTTCAGCACTACAGCCA 12352 29 100.0 32 ............................. CCCACACGCGACGCTTGCGGCGCACTGGCCAG 12291 29 100.0 31 ............................. TCGCTGCCGGTTTTGTCATAGATACCGTGAT 12231 29 100.0 32 ............................. CCCACACGCGATGCCTGCGGTGCGCTGGCCAG 12170 29 100.0 32 ............................. CCGCGCAAGGGCATCGTCAGCAGCTACAACCC 12109 29 100.0 32 ............................. AATCCTGAAACCGGGAAGTCTGAGTATGCGCC G [12100] 12047 29 100.0 32 ............................. TCGTCCAACGAAAACTTGCTCATGGCACGGAA 11986 29 100.0 32 ............................. GTCGAGTGGCGCATCCTGCGCGCCTGCGACTA 11925 29 100.0 32 ............................. CAGTGAGTGGGGTGAATGTAAAGTCTTCTTAT 11864 29 100.0 32 ............................. CTGTATTTCGCTAATCTCTCCTCCCTTCCATC 11803 29 100.0 32 ............................. ACGCCGTAGCCATACGGTGTTCCAAATGCAGA 11742 29 100.0 32 ............................. CGCTATAGTAGCGTGGAGGTTAAGGCTGGCGT 11681 29 100.0 32 ............................. GCATGGGCTGATGGTGCAGAGATTCAATATAA 11620 29 100.0 32 ............................. TCGGTCAGCTTCTCTTCGTCATTGGCCAGCCA 11559 29 100.0 32 ............................. ACCATCGTGGTTCCACCGCTGAATCAGAACAC 11498 29 100.0 32 ............................. AGCGCATCGGCCAGTTGGCCAAGGCGTCGCAC 11437 29 100.0 32 ............................. CAAGCAGGCGCAAACAGACTGGCAGTGGGATT 11376 29 100.0 32 ............................. GACGCCCGTTTCGATGTCGCCCACGCGGCTGC 11315 29 100.0 32 ............................. CGGTCGTTGCGATTCCGGCGTCTTTGCGCCAG 11254 29 100.0 32 ............................. TGGGAGCGCCTTGTTCTCCCAGGATGCGCGCC 11193 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 CTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : CTTGCAGATCAGGATCTGCTCCCTCGCTTTTCGGATCTGTAGCTAACGTGTTCCGGCGCGATGATGCGCCGACTCCATCGGCGGACAGTCTTCGTGAAACTCCACTGCGAAATTGCCGATTGAAACGGTCTTCCGCCATGAAACACGCCTACGAAATCTCGATGTCGATGCACCACAAGGAAGACTTGTCAGTCAGAACCCTTGTCGAAGAACTGCGCCTTCTCACCAACGAGCTTGAGAAGCTATCTCCATCGCTCAATGAATGGCTCCTCACCGGTGAAACCCGTGATTCAGCACTGCTCTATGACGTATTTTCCAGCAACACGGGCACGACATCAGCCCTTGCCGTTCTTGAAACTCGCCTCAAAGGAGCGATCGATCCAAGAATTATCTCGATCTGGAATGGTAAGGAAGGACATGCAGCCGCATCACTCAGAATCATGGCACGCCCGGCTCCGCACTTGAGCCTTGTGACGTTCGTCGGTCGTCCCCTGTCGTTC # Right flank : TCAACGTTTGCCGTCAGTATTCGATTGAACGTCCGCGACATCAACAGCGCTTCCACTGCGGTAGTAACGTCCAACGCGGTTGACCAGCGGTACCAACATCAACCAGAACGCATCGATGTCGGTCTCCGAGAGCAGTGGTTTCCTGCTGCTCGCGCCTGCCTTGCTGGCCGCACTCGGTCTGGTGAAGGGGTAACCATGCGCGGTGCTCGAATTAAAGACCATGCGTCATTCCGTCCAGCATCGGACCTGCTGCGCGAGCGCGCTGCATGGGTGCCGACGCCTCCTGGAAATGAAGCTGCCAAGGCAGAGCTAACTAAGTCTATTTCGCTGCTGCGTAATCGCAGGCGGCCCAATCTGCAAACGGGGATTGCTTATTCCTGGGCGGCCATGGCCAAGCCGGTGCGTCGGCACATCTTGGCGCTAGCGGGCCTCTCGGCGGATCGCTGGGAATGCCCCATTCACTCCTTTACCGAAGCTGACTTCGTGATGCAGCCCCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5741-5285 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADJ01000852.1 Herbaspirillum sp. B501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5740 29 96.6 32 .........................C... TATAGTTGACTCGGTGAAGCAAAACCCTTCAA 5679 29 100.0 32 ............................. CATGCTGGAATGAAAGGTAGTTCACATCCATG 5618 29 100.0 32 ............................. CAAAGACTTCATCACCTCAGCAGAAGCTTGCT 5557 29 100.0 32 ............................. AATTTCCAGTCGTTCATTGATTCCTGCGACTA 5496 29 100.0 32 ............................. CATACTTAGAGATGCGCAAGAAGATCAAAAAG 5435 29 100.0 32 ............................. CGGTCGTTGCGATTCCGGCGTCTTTGCGCCAG 5374 29 100.0 32 ............................. TGGGAGCGCCTTGTTCTCCCAGGATGCGCGCC 5313 29 89.7 0 ..............G.......A.C.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 CTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : AGGAAGCCGAGAC # Right flank : CCTTGCGCAGCAACATCCGCTGCGCACATTGAAATTCTTTGATGTCGTCGCCCAGACGAAGCCGTAACGAGGCGAGGGCAAGAGCGACCGGTTGCTGATCGAGAGCCATGGTGAGGTTTCTTTAGGGTGAACGAATCCCGCGTGCGCCAAATGGCGCACGGCAGGCGTTAATCAAATTGGGTTCAGTGACCGGCTAGGCGGTCAGCAACAGGTCAGGCGGTGCCTGTTCCTTGGGGGGCGAGATAGGCACGGGGCGAGATGGGAAGACTCACCTCAGGATTGGGCATGGCCGACAGGGAAACGGTACGAGAAATCTCCAGCGTGGCAACGAAGGTATGGCCACAATCGACGTTCTGGCATCGATAGGTGATTTCCTTCATCAGCGTAGACATGGTCCGGCTTTTGGCTGCACGCACTGGGCTTTGGCAATGAGGGCACGGCAGGCTGATTACACGCATGTTGTTTTCTTTCCCTTGATGGCATAGAGTGCACGCCCCTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2362-381 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADJ01000854.1 Herbaspirillum sp. B501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2361 29 86.2 32 TG.C.T....................... TACCTGGCGGCGGCTGGTTGCGTGGCGTCGGC 2300 29 100.0 32 ............................. GAGCATTGAGGATGTACGACCCGACGAACTCG 2239 29 100.0 32 ............................. TTCGATGGTGCGGGATTTCAGCACTACAGCCA 2178 29 100.0 32 ............................. CCCACACGCGACGCTTGCGGCGCACTGGCCAG 2117 29 100.0 32 ............................. TCGCTGCCGGTTTTTGTCATAGATACCGTGAT 2056 29 100.0 32 ............................. CCCACACGCGATGCCTGCGGTGCGCTGGCCAG 1995 29 100.0 32 ............................. CCGCGCAAGGGCATCGTCAGCAGCTACAACCC 1934 29 100.0 32 ............................. AATCCTGAAACCGGGAAGTCTGAGTATGCGCC 1873 29 100.0 32 ............................. TCGTCCAACGAAAACTTGCTCATGGCACGGAA 1812 29 100.0 32 ............................. GTCGAGTGGCGCATCCTGCGCGCCTGCGACTA 1751 29 100.0 32 ............................. CAGTGAGTGGGGTGAATGTAAAGTCTTCTTAT 1690 29 100.0 32 ............................. CTGTATTTCGCTAATCTCTCCTCCCTTCCATC 1629 29 100.0 32 ............................. ACGCCGTAGCCATACGGTGTTCCAAATGCAGA 1568 29 100.0 32 ............................. CGGCGCGAGCGTCTGGCCTTCATGGCGACCGC 1507 29 100.0 32 ............................. CGCTATAGTAGCGTGGAGGTTAAGGCTGGCGT 1446 29 100.0 32 ............................. GCATGGGCTGATGGTGCAGAGATTCAATATAA 1385 29 100.0 32 ............................. TCGGTCAGCTTCTCTTCGTCATTGGCCAGCCA 1324 29 100.0 32 ............................. TACCCGCCGACTTCTTTTGACGGAAGTAGGAC 1263 29 100.0 32 ............................. TCTGAATAATAGCCCCGATAACTACCCAACTC 1202 29 100.0 32 ............................. GTGTATGACAGCTCCGCCTATACCATTGTTCA 1141 29 100.0 32 ............................. ACCATCGTGGTTCCACCGCTGAATCAGAACAC 1080 29 100.0 32 ............................. CTTAATCAACCGCTTGCCAAGGGCGGCATTCT 1019 29 100.0 32 ............................. ACCATACCAACGTCCCACTGACTAGCTGGAAC 958 29 100.0 32 ............................. ACCCGAAGCAGGCCGCAGCCATCGCATACAGC 897 29 100.0 32 ............................. ACGCCGACCGCCAGGCCAAGGAAGCCGAGACC 836 29 100.0 32 ............................. TATAGTTGACTCGGTGAAGCAAAACCCTTCAA 775 29 100.0 32 ............................. CATGCTGGAATGAAAGGTAGTTCACATCCATG 714 29 100.0 32 ............................. CAAAGACTTCATCACCTCAGCAGAAGCTTGCT 653 29 100.0 32 ............................. AATTTCCAGTCGTTCATTGATTCCTGCGACTA 592 29 100.0 32 ............................. CATACTTAGAGATGCGCAAGAAGATCAAAAAG 531 29 100.0 32 ............................. CGGTCGTTGCGATTCCGGCGTCTTTGCGCCAG 470 29 100.0 32 ............................. TGGGAGCGCCTTGTTCTCCCAGGATGCGCGCC 409 29 89.7 0 ..............G.......A.C.... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.3 32 CTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : ATGTTCCTGGACTTAAAGGAACTGAGTTGCGAAGGGGCTTACTTCGCGTGGCAGCCTTCAGCCGGCAGTGGAAGGCGGGTCAGTTGGAGTGGGTCAAATCATCGAGCAAATCAACAGGTATGTCACTGAAAGACTGGTGCCCCCCACGCTAGTCGGCCCGCAGTAATTCCGATAAGCAAAATAATATTTGATCGGAATATTTTGTTGTCGATTTTTCTACGCTCGAATAAGATGATGAGCTATCGCTTATTGTTCGGTGTAAAAGAATACGTGACTTTCGCTTGATTGACCGATACATGAAATTCATTAATCCAGGTCGGATGGTAAAGCGAACGTCATTGAACAGGATAACTTACTGTTGGGGGACAGTTGGCAGACGTCATGCATCCGCAGCGCTTCGATGCGCTCCATCCGGCTACCAGGAGTATCTGGGCTATTGGTCGGTGCTGGCTCCGACCTCTCTCCCTCTGGATCAATCCCTTTCTTTGAGCGCTGTGCAA # Right flank : GCCTTGCGCAGCAACATCCGCTGCGCACATTGAAATTCTTTGATGTCGTCGCCCAGACGAAGCCGTAACGAGGCGAGGGCAAGAGCGACCGGTTGCTGATCGAGAGCCATGGTGAGGTTTCTTTAGGGTGAACGAATCCCGCGTGCGCCAAATGGCGCACGGCAGGCGTTAATCAAATTGGGTTCAGTGACCGGCTAGGCGGTCAGTAACAGGTCAGGCGGTGCCTGTTCCTTGGGGGGCGAGATAGGCACGGGGCGAGATGGGAAGACTCACCTCAGGATTGGGCATGGCCGACAGGGAAACGGTACGAGAAATCTCCAGCGTGGCAACAACACGCGAATGCCGCCTCCAGCGCATCAGTACGCATGACCTCGGCGGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //