Array 1 961085-960718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051534.1 Helicobacter pylori strain LIM-009 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================================================================================================================== ================== 961084 25 100.0 29 ......................... GGTGTCGTTATTAAAGCTAGTATTGTCAT 961030 25 100.0 32 ......................... ATTGCTGTTTTCAAAAGTGGATTGGGTGCTAT 960973 25 84.0 35 ....G.G....C.C........... ACTACTATTATCAAAGCTTGAACTTGTGCTGTTAC 960913 25 96.0 146 ......G.................. GTCCGTTTGATTAAAGGAGATGGTGCTGTTATTACTATTACCGCTGAAATTAAAGCCCCCATCAGTGTCATCTTTAAAGCTAGAGCCACTGACCTTGATATTAGAGCCTTTAAAATTCATGTAAGAGTGTTGCGTCCCTGCATCGT 960742 25 68.0 0 ..TT..C.A..C.CG.........T | ========== ====== ====== ====== ========================= ================================================================================================================================================== ================== 5 25 89.6 61 TAAAATTATAAGTGCCTTGATTGAA # Left flank : TAAATTCTGAGCGTCTGTAGCGACAGTAGTATTTTTGCTTTGAGTGTAGCTTGTATCGTTATTTGCGATCGTGTTGTCGCTAGTAACATTATTCAAAGAGTTTTGGGAATGAGTGAGATCCTCTTGGTAGGTTTTTTGGGCTTGTTGTTGTAAATCGTCTCCTAAAAATTGGGTAATGATGGATTGTTTGTTAAAGGTTTCTTGTAAGGTTTCATCTTGCCCATTAATATCAAAGGTTACATCATAAGTGTTATTGCCCACTCCAACATGGCTAATGGCTTTATCGCCCTTATAGTTGATTAGATCCCACAAATAGCTTTGATAAACCCCATATTGGATCGCCCCGTTTGTGGTGAGAATGTCATAGGTTTGATTGCTATTAAGGGTTTGATTGAGGTTAAAAATCGCATCAGAACCAAAAGACACACTGCCTTTAAGGCTGGCAAAAGGCGAACTTGAATTTAAAGTGTTAATGCCTGAAAAACTCACCTTGCTGGTAT # Right flank : AGTGAGGTTATTAGTCGCATTGAAATTGAGCGTGGCCCCACCACCATCAGAATAGGAGTTTCCGGTTGTGATATGGCTAGAATTAAAATTAATCGTTTGAGCGTCATAAGTGCCTGTGATATAGCCTACATCGCCTCCATTAATACCTGTGCCTCCAAAGCGGATATTCCCTCCCACATTAAGCGTGCCGCCATTGAATTTTTGCGTGAAACTAGCCCCACCAGCGCTATAAGTGGTAAGAGTGTTTAAATAATAAGTCCCAGAGCCTTGAGCGCTACTAAAAAGGCAATAGGAGTTGTGCGTGGGCGAATTAGGACCGCTCTCAATATTGTCATGATAACCCCAAGACGACCATGACCAATAACGGCATTCGTTAGCCCTTAGGTGGGATAATCCCCCTAACGCTCCTATCAATAAAACCGAAGCTTTTAAAAAAGATTTGCTGCGATTAGAGAGCTTTTTAATAGGTTTTAAAGCTTTTTTATGGCATTTTAAGGGCT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAATTATAAGTGCCTTGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //