Array 1 697301-699097 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP012332.1 Gardnerella vaginalis ATCC 14018 = JCM 11026 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 697301 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 697362 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 697423 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 697484 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 697545 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 697606 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 697667 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 697728 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 697789 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 697850 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 697911 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 697972 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 698033 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 698094 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 698155 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 698216 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 698277 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 698338 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 698399 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 698460 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 698521 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 698582 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 698643 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 698704 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 698765 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 698826 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 698887 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 698948 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 699009 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 699070 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //