Array 1 7-819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH815448.1 Fusobacterium periodonticum D10 supercont1.117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 100.0 44 .................................... CGGAAAGCTAGTAAAAAGATGATAAGTAATTCACTTCCTGTCAT 87 36 100.0 44 .................................... TTACTGTAAAAACAGCATATGATTTAATGGAGTATGCAGAAATA 167 36 100.0 42 .................................... TTGGAACTTTGTACCTTTTGTAAACTTTTCTGGTATTCTTAA 245 36 100.0 39 .................................... AGTTGGGGGATGAGGTAGGTTTAGGGGTGAAAAGCCAAT 320 36 100.0 37 .................................... ATTAATATCATCTATCCATTCTTTTCTTTTCTTTAGA 393 36 100.0 43 .................................... TTTACCACACCACATAGATTCATATTCTAGGACTTCTGGTAAA 472 36 100.0 44 .................................... GAGTAACTCACCTTGACATTTACAATGATACTACATTTTTTTTA 552 36 100.0 44 .................................... TAGCGAAGGTATTTACAAAGCATTATTTAGTTATAATACATTAA 632 36 100.0 37 .................................... TTTTTTGTTCTATTTAAGAACAAATTACGGTGTTTTT 705 36 100.0 43 .................................... TAAATGTATACAACGTTGTATAACTCTCATAGTCAAGATTATT 784 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 11 36 100.0 42 ATAAGAATGAATGATACTCCGTAAGGAGACGGAAAC # Left flank : ATTCTAA # Right flank : ATTTTTCAGTAAGTACCGTTTATTTTTCGCCGATACAATAAGAATGAATGATACTCCGTAAGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAATGAATGATACTCCGTAAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 3194-4412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH815434.1 Fusobacterium periodonticum D10 supercont1.103, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3194 30 100.0 36 .............................. AAGGGATCTGCATATCATAGGAGCAAGACCAGGAGT 3260 30 100.0 35 .............................. CCAATTCTGTTTTTTGCTGATGTGATCTTACCCTC 3325 30 100.0 34 .............................. TAGAGGCTCTACTATAAAAAGCCTCTGCTAAATA 3389 30 100.0 38 .............................. TTTAAAGCTTCTTGCTCTGTTATATTCCATTCTGAGAG 3457 30 100.0 36 .............................. TATTCCCTTGTTTTTGTAAGAAAGTTTTTACTTCTT 3523 30 100.0 35 .............................. TAATTGGTTATAGAAATGATCCAAAACAATCAATA 3588 30 100.0 35 .............................. TAATTGGTTATAGAAATGATCCAAAACAATCAATA 3653 30 100.0 37 .............................. ATAAATCTAGATGGATTTCTGCTGATGAAGTTTTACA 3720 30 100.0 37 .............................. TAAAAAGAGACTGTCCATATGTAACTATAGATAAAAC 3787 30 100.0 35 .............................. GTTTTTTAATTTAGTTAATGTTTCAACACAGCCAG 3852 30 100.0 36 .............................. AATAACTCTTTGTACTCCTCTTTAACTTTTCCTAAC 3918 30 100.0 38 .............................. AAAAACTATATAAATGAACTAAAAAGAAATTATATGAA 3986 30 100.0 36 .............................. GGTAATAACAAAAGTTCAAAATAATCCTAAAATGAC 4052 30 100.0 37 .............................. TATGCTTTCTCACAATTAGAGTTAGAAAAACTTAGAA 4119 30 100.0 36 .............................. GGCACTTGCAATAGGTGAAATTTCAGGTACTATGAC 4185 30 100.0 36 .............................. CTCAAGTGAACGGTTAATAGCTCTTGAAATGCAACC 4251 30 100.0 36 .............................. TATTTTCTCATTTTGAGTAAACAATCTTGCTGCAAC 4317 30 100.0 36 .............................. TGTGCTAAGTTGGTATATGAATTATTTATTATCAAT 4383 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 ATTTAAATTCCAATATGATAATACTTTAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAGAGCAAAACAAGAATTAGAAAACTCAGG # Right flank : AGAAAACTGTTCAAGCTGTTGCAGAAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTCCAATATGATAATACTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 40627-40821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH815370.1 Fusobacterium periodonticum D10 supercont1.39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 40627 36 100.0 44 .................................... CTGAGCCATTTACTCTCAGATCTCCATTTATGGTCATAGGACCT 40707 36 100.0 43 .................................... TGAACAATTAAAGGATAATGATAAAAAGGTTATTCAAGAGCTT 40786 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 44 ATAAGAATGAATGATACTCCGTAAGGAGACGGAAAC # Left flank : GATATTATTTCAAATAAGAGAAGAACACAATTATCAAAACTTTTAAGTGCTTTTGGTTTTAGAATACAAAGATCAGCTTTTGAATGTTTATTAACAAGAGAAAAATATAAGTTACTTGTTGAAAGAATTAATAGATATGCTAAACCAGAAGATTTAATAAGAATTTATCGTTTAAATCAAAATGTAATAACTGAAATATATGGAGAAAACTCAGAAGCAGAAAATGAAAATAAAGCTTATTATTTTTTCTAAAAAATAGAATCTCTCAATTAAGATTGGGAGATTTTTTATTTGTTGAAAATTTAAATAAAACATGTTAACATGTAACATACACCAAGAGAAATCCTAAGGTTATAAAAAGATATTAGTTAGACGATATTCAGAAAAAGAGGAGTTAAGGATGCTTTTAACTGAAATAAACAAAAAAAATTCAAAAATAAAAATATCATACGATAACACTCTAAAAAATTATTGCAACAAAAGACTTTTTTGACCATAGG # Right flank : TTTTTCATCATTTTACATCTTCTCCTTTATATTTTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAATGAATGATACTCCGTAAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1375-1863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH815420.1 Fusobacterium periodonticum D10 supercont1.89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1375 36 88.9 44 TAA.............A................... GAACTATTCTTCGCAAATCTAATACTTTTCAATTGCAAAGTCAA 1455 36 97.2 39 .......................C............ TCAAGAAGATAAAGAAACTTTAGCAACAGCTTATGCAGA 1530 36 100.0 41 .................................... TCAATGAGTACGAAAAACAATGGTGTAGTCAAGGATTTAAT 1607 36 100.0 38 .................................... AAAAAATAGGGGTGATTATATGGGAGTATTATTAAATG 1681 36 97.2 38 ....T............................... TAAAGAAATAATAATAGATGACAATGCTGTTGTTTATA 1755 36 100.0 37 .................................... TAGAAAAAATATTTGGAGTAAACTATAAAGAATATCA 1828 36 80.6 0 ......A........T.A...TA......C.T.... | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 94.8 40 GTTTCCGTCTCCTTACGGAGTATTATTCATTCTTAT # Left flank : AAATTTTGTTAACTAAATTTATTTTTATTTAAAAAATAATAAAGAGAATCTTTTTAAGATTTTTATTCTCAAAAAAATTCTCTTATTTATAAAAATTTAAAAGGCTCAGTAAAATTATTTTCATCTAAAAATTTTTCATACCATTCATAATAGTCAGTAGGTAATAACTCAGAACAGCCATCATTCAACCAATATCTTTCACCATAAGCACCAATCATAGCCCAATGATATTCCAATTCATGACTTAAATATATACACTCAAAATAATCAGCAGGTTTTTTGTAATAATGTTTATTCAATATCTTTAAAGATTCCGCATAAGTTTTATTAGCATATCTCATCAATATTTCCCTAATTACAGTCAACCATATATCATAATACATTGTAATTTGATCTCCATTATCTTCATCTTTAAAAGTTAAAATATTTTCACCTTTAGTTTTCATTTTATCACCTCATTAACTACTATAGTTTAACATACAAAATAAATTTTAAGGAAA # Right flank : TACTATATTCAAAAAAGAATTGTATCATAATAAATTTTTAGAATATTACCATCTGGTATTTTTATTTTGAGAATTTTTTGATTTATTTAAAATAAAAGTATATTTAACTCCTCATTTTTTAGATATTATTCAATTGCTATCTTTTATCTAATTTTTCAAGAAATAAAGGCTATGTAGAACAAAAAAAGAATTTTAAATTTTAAAAAAAATTCTCTTATTCATAAAAATTCAAAAGGCTCTGTAAGATTATTCTCATCTTTAAAAGTAAAAACATTTTTCACTTTTAACTTCTACTTCATCACCCCATTAACTATTACATTTTAACATATAAAATTTTATTTAATAGAAATTTCTATTTTTTAATCATGGTAACAATACCATCTCCTTACGGAGTATTATTCATTCTTATGGAAATAGGAGCCTTTTGCTTAAATGATGAAAATTTTGTTAAAGTTTCCGTCTCCTTACGGAGTATCATTCATTCTTATGCAATTGATGAA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCTCCTTACGGAGTATTATTCATTCTTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2428-2240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH815420.1 Fusobacterium periodonticum D10 supercont1.89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================== ================== 2427 32 100.0 45 ................................ AAACTTTGCAACTCGTTGATTCCAGCTAGGTAGTTCATCAATTGC 2350 32 96.9 47 ............G................... AAACTTTAACAAAATTTTCATCATTTAAGCAAAAGGCTCCTATTTCC 2271 32 96.9 0 .............................T.. | ========== ====== ====== ====== ================================ =============================================== ================== 3 32 97.9 46 ATAAGAATGAATAATACTCCGTAAGGAGACGG # Left flank : ACCACCTTAACTGAACCCCTAGACACAAGGAT # Right flank : TATTGTTACCATGATTAAAAAATAGAAATTTCTATTAAATAAAATTTTATATGTTAAAATGTAATAGTTAATGGGGTGATGAAGTAGAAGTTAAAAGTGAAAAATGTTTTTACTTTTAAAGATGAGAATAATCTTACAGAGCCTTTTGAATTTTTATGAATAAGAGAATTTTTTTTAAAATTTAAAATTCTTTTTTTGTTCTACATAGCCTTTATTTCTTGAAAAATTAGATAAAAGATAGCAATTGAATAATATCTAAAAAATGAGGAGTTAAATATACTTTTATTTTAAATAAATCAAAAAATTCTCAAAATAAAAATACCAGATGGTAATATTCTAAAAATTTATTATGATACAATTCTTTTTTGAATATAGTATAAAAGTGAATATAACTTCATAAGGAGATGGAAACTGATATTCTTTATAGTTTACTCCAAATATTTTTTCTAATAAGAATGAATAATACTCCGTAAGGAGACGGAAACTATAAACAACAGCAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAATGAATAATACTCCGTAAGGAGACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //