Array 1 234734-230436 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWBP01000001.1 Pedobacter cryophilus strain AR-3-17 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ================================== ================== 234733 45 78.3 30 TCC.CA.GC.C..............-.......G............ TTTCTTGATATAAGTATGCGGTTGATTCTG T,G [234704,234722] 234656 46 100.0 30 .............................................. AGCAGATATGGGTTATCAATATGTGGCGCC 234580 46 100.0 30 .............................................. GAGCATTCAATTTTAGTGCATAATTCATTT 234504 46 100.0 30 .............................................. GGTATTTTAGAAGTTTGTGTGATACACACC 234428 46 100.0 30 .............................................. ACGGCAAAGTTGAGAACCTTGTAAATCATC 234352 46 100.0 30 .............................................. ATACTTTAAAAATAATAACGCTGGCAATGT 234276 46 100.0 29 .............................................. AAAAATAAAAGAAAGAGTTCTAGAATCAA 234201 46 100.0 30 .............................................. AGCGTTTAATATTATTCCTGCTCATACCCA 234125 46 100.0 30 .............................................. TAGGCTTGCACATTATTGAAGATGATTTAA 234049 46 100.0 30 .............................................. TTATCAAAGAATAGATAAGCTAAGATATAT 233973 46 100.0 30 .............................................. CACTTTGGAAGAAAGACTATTTATACATTA 233897 46 100.0 30 .............................................. AAAGAGCTTCGCCACCGTAATACATGACAT 233821 46 100.0 30 .............................................. ACGCAACAGTAATAGTTAATACATTGCTTT 233745 46 100.0 29 .............................................. TCAAATAAGCAGAAAGTTAGCGTCCGTTC 233670 46 100.0 30 .............................................. AGACCAAGTCATTTCAATATCTTCAATAGT 233594 46 100.0 30 .............................................. ATCCTGACAAATTAAGTAAGAATCTTCATT 233518 46 100.0 30 .............................................. TACAACCAAAGCCATGCAAGTAAGCTTGTA 233442 46 100.0 29 .............................................. AATGAGTGCTAAAATAATGCCTAATTTAT 233367 46 100.0 30 .............................................. GCAGGAACTAAAACAAAGCCATTGGCCAGT 233291 46 100.0 30 .............................................. GATAAAAAAAGAAACTTCTTTGTCTCCCAT 233215 46 100.0 30 .............................................. CTTGTAATTATAAATCATTGTCTTTTAAAT 233139 46 100.0 30 .............................................. TATGTTTGACAGGTAACACCTGGGGCGGGT 233063 46 100.0 29 .............................................. CTTCTGAAAGACATAAATTAGATGCTATT 232988 46 100.0 30 .............................................. TCACTATTATTTTTTCCTGAATCATTTAAT 232912 46 100.0 30 .............................................. TCTACCATAACTTAAAAAACCATGTTTATA 232836 46 100.0 30 .............................................. ATTTAAAATGCCTACTGTCTGGTTGCCCTT 232760 46 100.0 30 .............................................. AGAAAGTTTATTATTACTGGGACTCAAGAT 232684 46 100.0 30 .............................................. TCGGTAAATTGGACACCTTGTTAACACCGG 232608 46 100.0 30 .............................................. AAGGAAGTACAATTGGATTTACAGAACATG 232532 46 100.0 30 .............................................. GATTACCTGTCTCGAATAGTGCCATTTATC 232456 46 100.0 30 .............................................. TATTGTTCCGGTTGAAAAATGGTATAACCC 232380 46 100.0 30 .............................................. GCCACTAATGCGATGCCTCTTTGCGCTAAG 232304 46 100.0 30 .............................................. TAATAAAGGTATCTTGAAGCTGAGTTGTTT 232228 46 100.0 34 .............................................. GTTGGATTGAAAGCAAATCACATCACCACCTGGT 232148 46 100.0 30 .............................................. TAGTAACCCCTACCCCCCAATTTCCGCTAT 232072 46 100.0 30 .............................................. CCGATAGCAATCCGCAATATCCGCAAGAGG 231996 46 100.0 30 .............................................. AACACGCTTTAAATCAGTTGTTTGAGCTAT 231920 46 100.0 30 .............................................. GTTCAACCGAGCATTTTGCAAACCATGTGT 231844 46 100.0 30 .............................................. TCAGTAAAAACAATATTAGAGCTTAAAGCT 231768 46 100.0 29 .............................................. CATCAGCTGTAACTTTAGCATATATCGAT 231693 46 100.0 30 .............................................. TTAATTATTGCCTCATTCGGCTCGTTTGCT 231617 46 100.0 30 .............................................. ACGCAACAGTAATACTCAATACATTACTTT 231541 46 100.0 30 .............................................. ATATGCCTTTTACATTATTTGTGATAATTT 231465 46 100.0 29 .............................................. ACGGGTCTTCTACTTACTACTGTATAGTT 231390 46 100.0 30 .............................................. TCTAAGATATAAGGAACAGAACTTCCAATA 231314 46 100.0 30 .............................................. TTTCCGCTTAAAGTTTTGATTCCATCTGTT 231238 46 100.0 30 .............................................. AGAATTAAGAAATCCAAAACATGAAAACAT 231162 46 100.0 30 .............................................. AAATTAGGTTTAATGGAAAGAGTTTTTGTC 231086 46 100.0 29 .............................................. AATATTGCCTAAATGATAGCCTTTTTGAT 231011 46 100.0 30 .............................................. ATTTAGTGTTACAACCAAAACATCATTCAC 230935 46 100.0 30 .............................................. TATAAGGTTTACCGCTCCAAATGCGAGGGC 230859 46 100.0 30 .............................................. TTGTTAATTGACTATTAATTATTGACTAGA 230783 46 100.0 29 .............................................. ACAAATGGCAAAAAGATTCACTGATACTG 230708 46 100.0 30 .............................................. AACAATTTGCTTACATAGAATATAAAATCC 230632 46 100.0 29 .............................................. TGCGCCACATTATTAACCGAAAGCTTATC 230557 46 100.0 30 .............................................. GAAAATGCCTTTTACAAATCGGAGAAACTC 230481 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ================================== ================== 57 46 99.6 30 GTTGTGATTTGCTTTCATTCTTTGAAGAACTGATATTTACAACAAC # Left flank : CCACCGCATCAGCAAATTTACTTTTGGCTGCCAATTGTGCGGCAGTAGGTTTTACTTTGCTCATGTCTGGGTAAGCAGTAATAATGGTGCGGTCTCCGGGATATTGCTTTACCACAATGGTTTTACCAATTTGCCCGCTAAAACCTTTGAGTAAGGGATTTTTACTTGTAGCCATATTTTAATGTGTTTGATAAACTAAATTTAGCTTATTTTTAAAAATATTACTATTTTTATTTCTATCCATTCGTTGATCAGGTGTGCTACTGGTCTTGTCTCTTCGTTATCCCTTAGTGTTCTCGGCTTCATCCTACGTTTATCCTATAGTTGTAGTATGGTGGTTGGTTATATTAGGCCTTGTTTCGTGTCCTCACGAAACAGCATTTTTATTGAAATTTAAGATCAGTTTGTGGGGACACGAACCATGGCTTCAGTATAATTATGCCTAGTTGTGATTTGCTTTTTTCATTAGTTTTCATTGTTTTTTTAAGGTATTCAAGAAC # Right flank : ATAGGTGGTCTTATTTTGCTGTTAATCAGTTTGTTGTATTTAAAATTAGAATTTAAAAAATCGAAGGGTTTTATGCTCTTCGATTTTTATTCTAATGAAATTTTCAGGCTATAGTGCTAATATTTTAAAATAATTCTAGCTGTTGAGGAGTATCAGGCAAACTTTTTTCTTCTTTTCCATAAAATAATTCCATCATCCCAAATTGTTTATCCGTAATTGTCATGATGCCTATATGGCCTTTGGATGGTAATAATCTTTTGACTCTTTTAATGTGCACATCTGCATTTTCACGGCTGCTGCAATGTCTTAAATAAATAGAAAACTGAAACATCGCAAAACCATCACGCATAATTTCTTTACGAAACTTACTTGCAGTGCTTCGTTCTTTTTTGGTTTCTGTTGGGAGGTCGAAAAATACTAATACCCACAAAATTCTATATTCATTAAGGCGCATGTTTAAAATGGCAATGGCTCATCATCATCAGCATTTTGCTTATTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGAAGAACTGATATTTACAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //