Array 1 1204030-1204462 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP031238.1 Haemophilus haemolyticus strain M28486 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
   1204030	    32	 100.0	    36	................................	TAAAATTTTAGGCACGTTATTAAGACTTGGTAACTC	
   1204098	    32	 100.0	    34	................................	CAAGTATTAGTGCCGGGTGCGGTGGGATTGATGC  	
   1204164	    32	 100.0	    34	................................	TATGCCTTTCTTCAGCTCAAGGTAGAGGCATTAA  	
   1204230	    32	 100.0	    36	................................	CAGTTATTATGCTATTTATTAGCAAAAAAAGAAAAA	
   1204298	    32	 100.0	    35	................................	CAACGTATCTTATATCCACCGACAAACAGGTGTAT 	
   1204365	    32	 100.0	    34	................................	AAAAAAGGCGCGAAAACGGGAAGGCTTTTTCCTT  	
   1204431	    32	  87.5	     0	......AT.....G.T................	|                                   	
==========	======	======	======	================================	====================================	==================
         7	    32	  98.2	    35	GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	                                    	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAATGGGCAAGCACGATTGCGCCGCATTGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGTCTGCGTTTTTATCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAACATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTATCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTAGGTAGGGA
# Right flank :  CTGTAATCACAATCAAATTACCGTTATTAATACGGGCAGCTGCGTATTTAAGTAGGATGAAAGAAGACAAATGACAATGTCAGTAAATGGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAATATAATGATTTTTGGCCGCTCTTGTTTATATGATTTTAATTCAACTAATTTAAAATATTAACCTGCTCTAAAAACTCATCTTCTGTTAATACTGTAATATTTAGTTCCTGCGCTTTGGCTAGTTTAGAGCCAGCGGCGTCGCCTGCGATGACAAAGTCCGTTTTGCTGGAAACAGAGCCACTTACTTTTGCGCCTAGCTGCTGTAGTAATGCTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACAGTTTCCCAATGTACGCCTTGTGCGATTAAATCATCAACAACGGCAACATTATGCGCTTCACGCCAGAA

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-4.40,-4.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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