Array 1 95606-93747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCU010000008.1 Klebsiella pneumoniae strain MRSN516635 MRSN516635_contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95605 29 100.0 32 ............................. TTATTTCTAAACTCAGTTTTGTTTCATGCAGT 95544 29 100.0 32 ............................. GAGGAGCCTCAGTTGCTGGTATCCAGTGCCGG 95483 29 100.0 32 ............................. CGTCACTGTTCTTCAGCAGTTAACCCAATCAC 95422 29 100.0 32 ............................. GAGAGTCCGACAAGAAAAAAGGGGAGAATTAT 95361 29 100.0 32 ............................. GCGACGACGCTCTGCTATCCCTCGCCGAAATG 95300 29 100.0 32 ............................. AACGCTCAAGGGCTGGGTTGTCCCTCGGGTGG 95239 29 100.0 32 ............................. TCCATCCTGACGGCGCAGACCATCGGCCAGCA 95178 29 100.0 32 ............................. GATGCCAACCTAAAAAAGCTGGGCGCTTTGGT 95117 29 100.0 32 ............................. CGCTGAAAATTCAGACCGACAGCCACATTGAT 95056 29 100.0 32 ............................. TACTGAAAGACGGCGACAAGGATAACGCGATC 94995 29 100.0 32 ............................. ACCCCTGGCTTTTTAGATACTCCAGTTGAAAG 94934 29 100.0 32 ............................. CACGTACGCAAAATTAACCGTTCCAAAACCAT 94873 29 100.0 32 ............................. ATGGCAAACCTTCGTAAAGAAGCGCGTGGCAG 94812 29 100.0 32 ............................. GCCGCAGACAATTCATGGTATGGATGGTCACT 94751 29 100.0 32 ............................. TCATTGAACAACTCACCCTGCGCATCAATGAG 94690 29 100.0 32 ............................. GTGTTCAGCCTCGGTAACTTCTACGAATATAG 94629 29 100.0 32 ............................. ACGGTCTTCAGGTGGCGCAATACGCCACCTGG 94568 29 100.0 32 ............................. GTGTTCCAGCATGGAGCAACTCCGGTGGCGAT 94507 29 100.0 32 ............................. GCGTTTTCTGAGATAACTAAAGCTCTTTTGGA 94446 29 100.0 32 ............................. ATTGATATGATGCATTATCATCCCTTCTTTTT 94385 29 100.0 32 ............................. TTCTCTTCCGGCCACTGGGTGAACTGCGGGTC 94324 29 100.0 32 ............................. CATCCCTGTTAACGTGTTCATTAGTCCGTTAA 94263 29 100.0 32 ............................. GCTGATAGCTGCCAGATAATTAGCGTCAAAAA 94202 29 100.0 32 ............................. CGGCATGAACTTAGCATTCAGGTGCAGTTTTC 94141 29 100.0 32 ............................. GCAATAACGCCCTTCGGCATCACGCCTAACAA 94080 29 100.0 32 ............................. TGAACGGTGCGCGATTCGTTCATCGCCATCTT 94019 29 100.0 32 ............................. AGCTCTGAGTTTGAAGAATGCCTGGCCGCGTA 93958 29 100.0 32 ............................. GGCAGCGCCTCGACTGCACTGCCGATTTTGAG 93897 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 93836 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 93775 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGCTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCGCGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6102-5103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCU010000083.1 Klebsiella pneumoniae strain MRSN516635 MRSN516635_contig00083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6101 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 6040 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 5979 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 5918 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 5857 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 5796 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 5735 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 5674 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [5621] 5620 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 5559 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 5498 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [5493] 5436 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [5430] 5373 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 5312 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 5252 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 5191 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 5130 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //