Array 1 3912487-3913491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057357.1 Escherichia fergusonii strain RHB28-C21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3912487 29 100.0 32 ............................. GCAATGCTTCCCTATATGCACGCGAAAAAAGG 3912548 29 100.0 32 ............................. ATCCGAATTGGCCCTACCGTTTCGATAGAGAA 3912609 29 100.0 32 ............................. GGGATGAAAATAAAATTGATGGCGCGGTCGCT 3912670 29 100.0 32 ............................. TTCCGCCGATTCCTTACGCTGTAGATATCGAG 3912731 29 100.0 32 ............................. TGGGGGGAATATTCTGATGGCGAGACTGGTCA 3912792 29 100.0 32 ............................. GCGATCTGTTGGTTGTTTTTAGTCAGTGCCAC 3912853 29 100.0 32 ............................. CGAGGTGCCACCTGTGTTATTTGATGCGATTT 3912914 29 96.6 32 .................T........... CCCACCACCGCGCTGTCGCCGTACTCCGCGCG 3912975 29 100.0 32 ............................. GACCGGACGGTAGCAACAATTTTACCGCCATC 3913036 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 3913097 29 100.0 32 ............................. TCGCGCCAGAACTGGAGGATCTCCTGGTTATG 3913158 29 100.0 32 ............................. CGCCGGTTTTAATAGCTGTTCACCCCAGCCCA 3913219 29 100.0 32 ............................. ATGGCGCAGGGGTTCGTTCAGTCCAGTGTGCC 3913280 29 100.0 32 ............................. CGTGTAGTAACCGTCTGAAGTACGTGGCGCAT 3913341 29 100.0 32 ............................. TTGGCGAGATTGTTAATGTTGCGATGTCTCAA 3913402 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 3913463 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAAAACCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3928298-3929241 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057357.1 Escherichia fergusonii strain RHB28-C21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3928298 29 100.0 32 ............................. GGCGGCGCAAACGAGCAAATTTTCGGTATTAT 3928359 29 100.0 32 ............................. ATCTGGTTGTTGCCCCCATTGCCCGTGGCGAC 3928420 29 100.0 32 ............................. TTTTCCAGCCAGCGCGGCAGATGGTTTGTAAA 3928481 29 100.0 32 ............................. GAAAAACTATAACAATGGAACATAAATCATAC 3928542 29 100.0 32 ............................. TTAACATTCTGCATTCCTCTCGCTAGGTGTTG 3928603 29 100.0 32 ............................. CGGGGCTGGTGGTTTTAATTATGCGGCGTTGT 3928664 29 100.0 32 ............................. CGATTATGAGTCATGCGATAAATAGTTACCTG 3928725 29 100.0 32 ............................. CAGTCACAACAAGCGATGATGTAATAATTAGA 3928786 29 100.0 32 ............................. GAATTGCGGGTAACAGATTTGCCCGGTAAGCC 3928847 29 100.0 32 ............................. CCCACATTCTATTTTGTTGAGCAGGAGTCAAA 3928908 29 100.0 32 ............................. CGCCTTTCATACTCTTTAGTTTATATTTCGAA 3928969 29 100.0 32 ............................. GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT 3929030 29 100.0 32 ............................. CCAGTGGCTTGTCTCCCGTTAAGGTCTAAAAG 3929091 29 100.0 32 ............................. CATTACGTAAAAGCGTAGAAGGCGAAAATCAC 3929152 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 3929213 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCCGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //