Array 1 358-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJL01000015.1 Acidovorax cattleyae strain DSM 17101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 358 28 100.0 32 ............................ ATGGTCAGTAGGCCCCCAGCGGCAACAGCTCT 418 28 96.4 33 .............C.............. TCTCTGGTTGGCGCGCACCACGCGGCTCTTTCT 479 28 100.0 33 ............................ AAGGAGCCGGGCGAGCTGCGCGGTTAAAGGCGC 540 28 82.1 0 A...G..........C.AG......... | G [563] ========== ====== ====== ====== ============================ ================================= ================== 4 28 94.6 33 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : ACCCTCGTGCCTGGATCTCGCGCAGCAGCACGGTAGCCGGGATCCAGCGCGGATGGGCCTGCGCGACGCGTTCGCGCAGATAGGACTGGTAGGCGTCGAGCTTGCAGGCCCTCGGCTCGCGCGGGCAGTAGCGCTGCGCATCTTGATCGCGCAGGTACCTGCGCACGGTGTTGCGCGAGCAGTCCAACTGCTTCGCGATCGCTCTGACACTCTCGCCCCTGCGGGCCATCACTCGTATCTCCACTGCCTGCTCCTGAGTCAACATCAGCAGCCTTCAAAAGGCCGCCATCGTGTCCCAGGTGGGTCACTTTTACTTCGGCGCAGTGGGTCAGTTTTACTTCGGCGCTAACACGCTGCG # Right flank : AGCCGTGAGCCTCTTAGCTGTCGCCAAGCGGAAGGCGCACGTGGCACATACCGGGGGCGCCCTTCAGGGCCTGGTGTTGGGGCAGCCCGGTATCGGTGCCCCTTCCGTACATTCCGATGGGATGTTTTTGAAGACGACATCCCTGCCCACATAGACCTTGTTGGCCTGTATGGGTGCATCGAGTTGCCATTCGATATCGCCGTTCATCCAAAGATCGACCACTTCACTTCGGCCCAGCAAGGTCTTGGGCTCGATGCGATAGAGCTGCACTACATACGGCATCTTGAAGCGCGGATGGGTGACACGCTGCAGGAACGACGCCTTGTGGAATTCCAAGCGGTATACCCGGTGCGGGCTGTTCTCGGCATCGACGCCGGTGGGCGTCGCCAGAGCCCATCCTGCCAAGCAGCGCATTCAGGCCCAGGCACTAGGCAATACAAGGCACGTTCTTGAGGTGCGAAAGCTTCATCACCACTTTACGTAATGTGATGCCATCGGAC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36597-36895 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJL01000011.1 Acidovorax cattleyae strain DSM 17101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 36597 32 100.0 34 ................................ CCGCACCTACAACACGCGCACTGTCTTTTTTTGA 36663 32 100.0 35 ................................ GTGCTGTTCCTTGTGAAAGCCGCCGCGCGCCTCTT 36730 32 100.0 35 ................................ CCACTCCCACACCAGGGGCACACCGCGCCCACGCA 36797 32 100.0 35 ................................ TCGAGCATGAGCACGCGGGGCTTGCAGAGCGCCAC 36864 32 96.9 0 ...A............................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 99.4 35 GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Left flank : GCCAACGTGGTGTTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGCTGCTCAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTATGTATGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGGGCCCTTTCGCTCCCTCCCTTTCCTTTTTCTTGTTGCCGGGCGTTGCGCACCCCGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGCAAAGGGAGTTTTTCCTGGGTGGGGGACGGGAAGCGCGAGCGGCGGGTCGATTGGGGCGGGTTCGCGGATGTATGCGGAAAATGGCTGGGGTGGCGCGGGTTTATAAAGGTGCC # Right flank : CAGCACGAAGGCCGACGCATCGAACCGGCGCACCGGGTCGCGTGCGCTCCGGCGGGCGCGAGCATTGCGCCACGCCCCCTACCAGCCAGTTTCCAAAACAGGATTTCCTGTCGGGAAACTGGCCTCAGTACTGCAACGCCGGACGGTCCAGTGAATCCAGGCGCATGGCGTCTTCCAGGATCGCTTCCGTCAGCTGCGGCGTGCTGGCAGGTCCTTCGCTCATTCCGTAGGCCTGCTGCGCAGCATCGGCTGCAAGCGCATGCTGGGTTCGAGGAGAGTACTGTGCAAGCTCCTGCCGCGTACTCTCGGCCAAGGCAGGATCAATAACCGGCATCGTAGTGAAGATGGCGCCGGGTGTCGGATTGCGAAGACATTCGGCTTCCCATTGCTGCGCCGTGGCATACAGCGAGGTTCGCGGGTCCTCGATCTGCGCCCTGACGGCCTCCATCCGCGCCCGCGCGTGGGTGGCAGCGGGTTTGTCGAAGTGTTCGAGCACCGCA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38810-39621 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJL01000039.1 Acidovorax cattleyae strain DSM 17101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38810 28 100.0 33 ............................ GCGTGCGCGTGCTGTGCGCGCCCAGGTCCGCAT 38871 28 100.0 32 ............................ TTGCGTGCCACAACCATGGCGTTCGAAAACAC 38931 28 100.0 32 ............................ AGTCGGCAATCTCGTAGCCGCGCAGGTGGCCC 38991 28 100.0 32 ............................ AGCAGAAGCGCCGTTGATCGCTCAGCTCGACG 39051 28 100.0 33 ............................ AATACGACCGGGCTCTCCGCCAGTGCCCCACGC 39112 28 100.0 33 ............................ TTGATGATCGGCTTGTGGTTGGTGGGCATGTAG 39173 28 100.0 33 ............................ GTCGCCGGCCTCCAGCACGATGGAGCGTTCCGT 39234 28 100.0 32 ............................ CAGCATGAGCGCTGACACCACCCCGGGCCTGG 39294 28 100.0 32 ............................ TGTCCGATGTCTTCTTCGATGACGCCGAGATG 39354 28 100.0 32 ............................ AGGACGCACTCTTTCGCGAACTCCATCACGGT 39414 28 100.0 32 ............................ CACGAGAACGGGCAGTTGCCCTATCCCTCCGC 39474 28 100.0 32 ............................ TTGATGGGGAGCCGCCAAAGGGTGCCACCAAG 39534 28 100.0 32 ............................ TTTCGTTCGACCCGTTTGAAGGCGACTTCGGC 39594 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CCGCCTTGCTAGAGCTGCACACACAGCCCTGGTTGCAAGGTATGCGCGACCATGTCCTTGCGGGCAATGCCATTCCGGTACCTGCGGACGTGCGGCACCGGGTGGTGCGCCGCGTGCAGGCGCAGAGCAATCCGGCACGCCTGCGCCGCCGGCAAATGCGTCGGCACGGCTACGACGAAGCCGAAGCGCTGCGGCGCATTCCGGACAGCGCCGCGCAGCACCTGCACCTGCCTTACCTACACCTGCAAAGCAGCAGCACCGGACAATCGTTCCGGTTATTCGTGGAGCATGGCCCGTTGCAGGCTGAGCCCCGGATGGGCTACTTCAGCGCCTATGGACTGAGCACCACGGCCACCGTGCCCTGGTTTTGACCCTTTTTTGGACGCTGCCCCTGGCGCCTTAAAAATCAATGACTTGCACGCGTCCGGCGCGGAAGGGTCAACGCGCCAGGAACCGCAGTTTCTCTTTGTGGGTCAATAGGATAGGACGTTTTATCGCCA # Right flank : AAGCCGCCACCCATCGGGCACAGCGGGCGCTGCTGTCAACGCCGATTTAAATCTGACCCACTTTCCGTCGGATCGCCGAAGTAAACCTGACCCACCCGGGGTCTTCTTCCTCGCGCTGCTCGGCTGCGCAGGGCGAAGCCCGTAGCAGCCGAGCAGCGCGGCGCCGGTCATGCCGCTGCCGTCGCCCTCCTGGCCGTCTGCCCGGCCTTGCGTTTGTCCTTCAGTCGGTAGCTCTCGCCGCTGATCTGCACGATGTGGGCGTGGTGCAGCAGCCTCGCCCGCGCACGCCACGAACTTGACGTAGCTCGCACGGCTGTAGCCCAGGGTTGCGACCATCGCCAACAGCGGATCGCGGCCCCGTCGCACGTAGGTGAAGTCGGCCTGCATCTGCTGGCCCGGCGGCGTCTCGAAGCGCACCAGCGGCTCGGGCTCGGACTTCTTGAGCGGGGCGAGGAATGCCTTGAGCTGGCTGATGCCACCGGCATACCCTCGTGCCCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //