Array 1 123441-121887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWP02000039.1 Escherichia fergusonii strain GTA-EF04 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123440 29 100.0 32 ............................. CCGGGAGAGATTGGGTCGAAGGGCTGGACCCT 123379 29 100.0 32 ............................. TCCGCTCAATATGAAAAAACGCTGGCTACAAC 123318 29 100.0 32 ............................. GGAACAGAGTTAATACTTTCAATCTTGAAACC 123257 29 100.0 32 ............................. ATGGTGAGAAAAAAGTGAAGTTGCGGGAAACG 123196 29 100.0 32 ............................. GAATACCATTTATTTACATAGTATGCACACAA 123135 29 100.0 32 ............................. CATCTATTTTGCATCGACACTTACTATGATGT 123074 29 100.0 33 ............................. GGGAACGGGTGCAGACCACCTTTCTGACGGATG 123012 29 100.0 32 ............................. ACCACTTTCACCGACAAAGAACTGATTAAAGA 122951 29 100.0 32 ............................. CAGGATATGAAATAGCACCCACTTTGCGGGCA 122890 29 100.0 32 ............................. ATATCTCCCGTTAAATCAGAGACATAAATACT 122829 29 100.0 32 ............................. GCTGATAGAAACCCTGATTTGCTGAATTGGGA 122768 29 100.0 32 ............................. GTTTGCTCGAAATTGTTTCTGGCTGCTGTCTC 122707 29 100.0 32 ............................. GCGCGGTCGCTACAATTATGGGCGTTGGCCGT 122646 29 100.0 32 ............................. CAACGCCAGCCACGTTACCCGCTGGCGATTAG 122585 29 100.0 32 ............................. GATTGTTTGAGATACGAGCAAAGGCGGGTGAT 122524 29 100.0 32 ............................. ACGCGATGTGTGACCTTAAAATATTCACCTGG 122463 29 100.0 32 ............................. TTAACCGTGGCTAACCCGCAACTTGCTGTTAA 122402 29 100.0 32 ............................. CCGGTTATGCTTCGGCGGACGTAGCAAAGGTG 122341 29 100.0 32 ............................. AAATCCGGTTCAACCAGCTCCACAACGGCACC 122280 29 100.0 32 ............................. CCACTGAATATCAATCAATAGCTATTGGTGCG 122219 29 100.0 32 ............................. AAACGTTGGTATAAGTCTTTATAGGGCGTCCG 122158 29 100.0 32 ............................. AACACCTACGCAAACGAGCAGTGGCTGAAAGG 122097 29 100.0 32 ............................. AACAGGCGCTCGTTGACGTATACAGAGCATTA 122036 29 100.0 32 ............................. CCTGGCCGCCGAGGTTATGAGCGCGCGGCAGA 121975 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 121914 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139955-138400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWP02000039.1 Escherichia fergusonii strain GTA-EF04 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139954 29 96.6 32 ........T.................... CCAAAGGGGTGGGGTGTGCTGTTCTGGCTCCA 139893 29 100.0 32 ............................. CAAACTGACCTGATAGAAAAGGCAAAACAAGC 139832 29 100.0 32 ............................. GATAATGCTGAAATTGGGGAGGTAATTTCTAA 139771 29 100.0 32 ............................. CGGTAGCGCGGACGGTATATTATGTGAGTATT 139710 29 100.0 32 ............................. GTCTGGGAGTGTCCATCGGGCAACTTCGCGCA 139649 29 96.6 33 ............................T GTGGAGTATCAGTGCCTGGGTGGCAAGCAGTAA 139587 29 100.0 32 ............................. CCGATCACATCATGTTTATTCGCGGTCGTATT 139526 29 100.0 32 ............................. GGTCCAGGACGCTCTCAACGCCCTCGAAACTG 139465 29 100.0 32 ............................. AGATGGAACGGTAATGGCTGCTTCTGTTGTAT 139404 29 100.0 32 ............................. CGAGTTGTACCGCTGTTCGATCCTGCATATGT 139343 29 100.0 32 ............................. GCCAGTAAACTTCACCCATGAATCCCAGATCA 139282 29 100.0 32 ............................. CCCGCGAGCGAATGCAGGAAATGCTAAACATT 139221 29 100.0 32 ............................. TGTTGATTTAAATCAATTTCGTGAACAGTCGT 139160 29 96.6 32 .................A........... CCGCCGCCGCGTCGCGTGAAACACAAAAAGCC 139099 29 100.0 32 ............................. CTTTTTCAACGTGATCTATGTACACGATCCGG 139038 29 96.6 32 ............................C CAACTCGCCCCAGACCGACACGGATGCTGGCC 138977 29 100.0 32 ............................. CGATGGTTTGCGCGTCCAGCGTGGCGCGATAA 138916 29 100.0 32 ............................. TGCAATAGCGATGATTTAATGTGCAAAAAGTG 138855 29 100.0 32 ............................. ATTTATACGATGACGAATGGTCAGCCGGGTTT 138794 29 100.0 32 ............................. ATGGACCGTGCCGCTTTTCGCCACCTGACGCC 138733 29 100.0 32 ............................. CGGCCTCACGCGGATTCTTCCCCCGCCGGAAT 138672 29 100.0 32 ............................. GCCAACTTCTGGTCGATGAAGTGCTGGAGTTC 138611 29 96.6 32 ..................T.......... ACGCCAGCGGGTGGAAACTACTACCTTAATCT 138550 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 138489 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 138428 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAATACTTCTACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCTCATCCTGGACTAATCATTATCATTCTCTACAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTACATTGTAAATATTAGATTAAAATAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //