Array 1 529365-528056 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJGQ01000002.1 Klebsiella pneumoniae strain EuSCAPE_RO030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 529364 28 100.0 33 ............................ TTTTTATTCAAGCGGGGCATAGAGGTGTTCAGG 529303 28 100.0 33 ............................ TGTACAGCAAAAGAGCAAGGACGTGGTCATGGC 529242 28 100.0 33 ............................ TGGAGATCTGGCAGTAAAGGGAGTTTCTGATGA 529181 28 100.0 33 ............................ CGCGTGGTGGACTGGAAGGAGTATTACCGGTTT 529120 28 100.0 33 ............................ TTGCGGCATAAAGCGGTCGCGTTCGGCGTTATA 529059 28 100.0 33 ............................ CCATGCTGCAGATAAATGACTGGATGGGGGAAG 528998 28 100.0 33 ............................ CCTGGATCCGAAACCCCTCCCAGGCGCTGCGGA 528937 28 100.0 33 ............................ AACCTGAAAAGGTCAAATTTATAAAGGATGAGA 528876 28 100.0 33 ............................ CCCAAAAGCCATAAATTCTCCTATTGTTTCCAG 528815 28 100.0 33 ............................ CAGCGCTCCGCCGCAAAATCACGCGTTGAGGCG 528754 28 100.0 33 ............................ CTGGACGAGTCATTGAGCGGGAGATACGGCGGA 528693 28 100.0 33 ............................ CGGAAAAGGCCATCAAGGTCATGATCCAGGAAA 528632 28 100.0 33 ............................ TAAACTGCCGCTTATCGCGTTTGCGTGGGCTGA 528571 28 100.0 33 ............................ TTATCTACCCAGGAACTTCTTGCTTGGCAGTTT 528510 28 100.0 33 ............................ TAAAGCGTTGTGGTGATAGCCATCAGCTAATTT 528449 28 100.0 33 ............................ CCAGTATTCGCGGCTGGCTGGTGGCAAATGTTG 528388 28 100.0 33 ............................ TCGACTGGCGCTCACGGAAAACGGCAAGGTCAA 528327 28 100.0 33 ............................ TGCCCTCGAGTCGGAAAAAGCTATCGACCGCGC 528266 28 100.0 33 ............................ CTGACGAACCAGCGAGGCGGCGGTGCAGAAATA 528205 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 528144 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 528083 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 538695-538118 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJGQ01000002.1 Klebsiella pneumoniae strain EuSCAPE_RO030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 538694 28 100.0 33 ............................ CCTTCGCGCACACCATCAGATTCACTTCTGAGG 538633 28 100.0 33 ............................ TAAAGAGCCCTTCATTATCCCACCGCTGGTCGG 538572 28 100.0 33 ............................ CTGGACGCCGCAGGGCTTATGCTGCACGATGTG 538511 28 100.0 33 ............................ CTATCACGCCGTCGTAAACTTCTTTGAGGTGTC 538450 28 100.0 33 ............................ TACTCAGTGAGTGAGAGGGTTTGAGTATCGTCA 538389 28 100.0 33 ............................ CGAGCTCATTCAGTCGCTGGAGTCGGCGGGCGA 538328 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 538267 28 89.3 33 ............C.........G.G... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 538206 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGACTCTATCCT 538145 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.9 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTTGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //