Array 1 120836-121244 **** Predicted by CRISPRDetect 2.4 *** >NC_012440.1 Persephonella marina EX-H1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 120836 37 100.0 36 ..................................... TTTCTGTTTTTTGCTTTTCATATATTTCTTTTATTC 120909 37 100.0 34 ..................................... ATAGGATCAATCTCAACTACATCTTTTTTAAACA 120980 37 94.6 42 .C......A............................ GGATTATTGACACATCATAAGGGTATCCGTGCCTTGCAAGTT 121059 37 94.6 38 ...................GA................ GAACTAAATCTCCGTTTTGCTCAAAATAGTGTGCCATT 121134 37 83.8 36 GC......AC..........AG............... TCCTCAAAGTAGCCTATTAATTCTCTTAAAAATTTG 121207 37 78.4 0 ........AC..........A........G...TTTT | A [121209] ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 91.9 37 CTGTTGAAGTTTTCCCGAGATATAAGGGAATTGCGAC # Left flank : TCTCAGAAAAATGGAAGCTAACGCTTACCTCATAGGTCACCCAGATGAGGCTTGTCCTGCAAAATGGGAGCCTGGAAAGAAAACACTCAAACCTTCTGAAGAACTTGTTGGACACGTTTACGAAGCTCTAAATGAGTAATTCTATAAAGGGGGATCTTTCCCCCTTTCTTAAATCTTTCAGTAAATCAATAGTATCTTAAGTATTTTAAGCAATCTCAAAAAAATTAAAACCTCTTGTAGCAAGTTATATCAAGGACTTTCTTTAGTTAACATCAAAAAAATCAAACAGTAATTGAGATTTGAAAATCTGTCAGAAATAAAGGGTAAAATTTTGAGGATGAAATCTGTAAGTTATTGAAAAATAATAAGCTCGTAATTGAGACAGTATTGAGACACGCCTGTTGACAGTTTTTAGATTTTTCAGTATTTTAATAGGGAGTCTGTCAGAAATCGGGGTTTCTTGGAAACAGAATAGGCTTATATCAATAATTATAGAGGAG # Right flank : TCTGAAAGCTTTTTCTCGCTTAAAAGTGGTATAATAATTCTTCAATTTTTAGTAAGGAGCTGATGCTTTTTGTTACAGTTCAAACTCGTAAGATTTCATCCCGTCAGACTTGAGGTCACCATAACCTCATCACAATTAATCAATATGTTTCCTATAGAAATTCAGGAACATCCCACAATGGGAGATATAGAAAGAGTCTGGATATCCGGAGATAAAGTATTTTCAGTTAAAACTCTTGAGCAGTTTTCCGTAAATCTGTCTGCAGGAAGAAAACATATAAAAGTTTCTGATGATAAGATGTTAAGCATTTTACATGACCTTGAAAAATTTGAAATAGCTTTATATTATGAAGGGAAAGTTGATAAATATGTAGTGGAAAGGATAAAATTATAGTATCATTAATACTTTAAATAAAAACTTTAAAAGGAGGCTGATCTTAATGGCAGTAGTTGTAGTTCAGGAAGGAGAAAGCTTTGAAAAGGCATTAAAGAGATTTAAAA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTGAAGTTTTCCCGAGATATAAGGGAATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1254831-1254081 **** Predicted by CRISPRDetect 2.4 *** >NC_012440.1 Persephonella marina EX-H1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1254830 29 100.0 38 ............................. TATCAACGAAAACAGCTATCAGCATATTTGCCTGCTCA 1254763 29 100.0 34 ............................. CGATCAAACAAAAAAGGAGGAAAAGAAAATGGAG 1254700 29 100.0 35 ............................. CAAAAAAATAAGAAAAAAGACAGGTAACCAGTCCT 1254636 29 100.0 34 ............................. CCTCTAAGAACCAGAGGAACATTCCCTGTAACTT 1254573 29 100.0 36 ............................. AAAAATAGACGAACTGAAAGCTAAAGGTGTTGAGGG 1254508 29 100.0 36 ............................. CCGTATTTGTCATTCCAAATAGAAAGCAATGTTGAA 1254443 29 100.0 36 ............................. TACCTATTGACAAATCTCTTGAATGTTAATACAATG 1254378 29 100.0 38 ............................. CCAGCTGAGATGAAATATCTAACTCCTTCTTTGTCTTC 1254311 29 100.0 37 ............................. AAGAGTCTCTGTTTTTTCTTTGCTCCCCATAGATGAA 1254245 29 100.0 36 ............................. CCTTTAAGGTAAAGGTGAAGTTGCTATAGACTGATT 1254180 29 100.0 40 ............................. CTGCAAGTCCTTAGGAACATCAGGACGAAGAACAAAGCCA 1254111 29 93.1 0 ........................A...A | AA [1254089] ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.4 36 GTTTTCTTTGAACTAAGTGGGATAGAAAG # Left flank : AAAGGTTTGGTTATCTTGCCTCTGTAAAGATATTCTTTGTAGTCTATATCAGCTTTTTTTAAAGCTTCTTTAATGAATGAAACTGCCCTATGTCTGTATATAATAGGGTGTTTCTCTGCTTCGATTATGATTTTTATTCTCATATCTCCCTTCCTGAAGTTTATTCCCCCAGTAAAAAGCGATTTTCTGTTTTAATAAAGTTTTGTCTTCTATTTTTTTAGAATTATAGCAGATATTTTCTTACCTTATAATAAGTATAAAATGGTTACATGGTATGAGAATAGGGTCAGATTAAATGCATTTTGAGTGAGAAAGACTAAGATTTTTAATCCTTGATAATCAACGTTTATAAGATAATGATAATAAGTATAATTGCATTACTACAGCTTTGATGCAGATTACTTATTTTTGCAAAGATGTATAAAAGTAGAATGATCCTTCTCTAAATAGCTTTATAGCTTGCCAAATCACTATATTTTTTTATATCGTTAGAATGATGG # Right flank : AATTACCTTTATGAAAGATTTATATGTATTTTATCTTCAAATAAATACAGAATCTTTTTAAAACCTTCTAAACGCTCGTTAATCTCTCATCCTGAAGATACTTTTTCAGGAACTGTCCTGTATACGAGTTTGGATTTTCCATTATCTCCTCAGGTGTTCCTACAGCTACAATCTGTCCTCCTCTGTCTCCTCCCTCTGGACCAAGATCTATAATCCAGTCTGCATTTTTGATTATATCAAGATTATGTTCAATAACTACCACTGTATTTCCTTTATCCACAAGTTTATTAAGAACCCTTATAAGCTTTTCCACATCATGTGAGTGAAGTCCTGTAGTTGGCTCATCAAGAAAATAAAGAGTTTTTCCTGTATCTCTTTTTGAGAGCTCCCTTGTCAGTTTTATCCTCTGAGCTTCTCCGCCTGAGAGTGTTGTTGCAGGCTGTCCAAGTTTTATATAATCAAGTCCTACATCATTTAAAACCTTAAGTTTATTTCTGATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTTTGAACTAAGTGGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 1269028-1269448 **** Predicted by CRISPRDetect 2.4 *** >NC_012440.1 Persephonella marina EX-H1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1269028 30 100.0 35 .............................. TTATGAGCTGGAAATATCTATAAGAAAAATTGAGG 1269093 30 100.0 34 .............................. CTTTCTGCTCTACATATATTGTTTTTCCTGTGTA 1269157 30 100.0 36 .............................. CCTTCTTTGCTTGAAAATTGATCAGACGATAAATGA 1269223 30 100.0 34 .............................. GAAGATCATAAAACTTATATCTAAAACTCCCTAC 1269287 30 96.7 35 ............................G. GGAAGATACATGTAATAAGGAACTGGGACGATGCA 1269352 30 86.7 36 .....C.T.....T...............G TTGTTGTTGGTTGTATATTGACCATCACTGCGTCTT 1269418 30 80.0 0 ....G..T.A...T.......A..G..... | G [1269446] ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.8 35 GTTTTTTCTGAACCAAGTGGGGTATAAATT # Left flank : TTAAAGAAATATCTTTACTGGAGTCAGCTATCTACATTTGAGGGTGAAATATCTGAAGGTAAGCTTGCACAGTGTATGTCTGAGATAAATGATGTTATTGATCGCAATGAAGACAGCATTTATGTTTATGAGGTGAAAAATCCCAGAAATATAAAAAAGAAAGTCTTAGGGATAAAAAAAAGTTATATGGATAATTTTTTGTAAAATTTTTTAAATATTGCACTAGAATAATAATAGTTTTATAAAGGATACATGGAAACAGAATATGTTTAACATAGGATTTATCTCAAAATAAAATGCATTCTGAGTGGAGAAAACTCAAATTTTTAATCATTGATAATCAACGCTAATAAGTTTATGCAAATAAATATAATTGCATTACTACAGGTTTAATGCAGATTACTTATTTTTGAAAAGATGTATAAAAGCAGAATGATCTTTCTCTAAACGGCTTTATAACTTGCTAAACTATTTATTTTTTTATACTTTTAGGCAGATGG # Right flank : TTTATAATGGAAATTGTATAGTAAAGTTTTACAAAATTTGAACTACCCGATAAAAGTTTATCTCAGCTTGAAAAAGAGGTTAAGGAAAAGGGACTTAATGATAAAGAAGTTGAACAGACATGGGATGAGTTTTTAACTATGCTTGATAATTACAACTCTAAAAGCGGATCATATTATCAGTACACATTAGAAGATTTTAGGAATGGAAAAGTTGATAAAACGTTGGAAGCATTGAAGAAAGAAATAACAAAAATGGAACAAATTCCGGGATATCTTGAAAGCGAACAACGAAATAAACTCTACAATAACTTCAAGCAACAGTATAAAGACTTAACAGAGTTAAAGAATAAATATGATGAGGCGGCAAATAATACTCTTGTGTGGAATATGTATAATTTCCTTAAAAGGGGGAGAGAAAACTCAATTGCAACCCCGGAAGTTAAGGATGGTGGTTTATTTGGTAATGATCCGTCGGCAGTTGATAAGACAACTGGCAAGCC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTCTGAACCAAGTGGGGTATAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 1302353-1303310 **** Predicted by CRISPRDetect 2.4 *** >NC_012440.1 Persephonella marina EX-H1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1302353 29 100.0 39 ............................. TTAACAACATCTGTTGCTGTTACTGCAGTTACATCTGTA 1302421 29 100.0 39 ............................. GTATCTTCTTCTGCTTCTATATAAGATATAGTTTTACCA 1302489 29 100.0 36 ............................. AAGCGTGTATCTTGTGGTGTAACGAAATTGCGGGAT 1302554 29 100.0 37 ............................. GTGGAAAGGTTTAAATTTTAATTAGTCCACTGGTGAA 1302620 29 100.0 38 ............................. TTGGAAGTATAACATTTTTAGGCTTTGAAACTTCATCA 1302687 29 100.0 36 ............................. TTTCACTCCGGTGGTGTTATCGCTCATTCTGGAATG 1302752 29 100.0 36 ............................. ACCAGTGATGACGAAAGACTTGCAAGGTTCTGGGCT 1302817 29 100.0 37 ............................. GCAGTTCTTAAAGCTCTGGAATCTATGAATGCAAAGT 1302883 29 100.0 37 ............................. ACTTCCTGATTCTGTTTCAACAACATCCTGCGAAATT 1302949 29 100.0 39 ............................. TTTTTCATAGCTACCCAAATAGGCTTTGCTACTGATGTG 1303017 29 100.0 36 ............................. TCTGTTTTAGCAGGGATAACAGTTTTATTAACATTT 1303082 29 100.0 40 ............................. CAGCAACAGGTTCAAGTATTTTCTGTATTGCTCCAAAAAT 1303151 29 100.0 36 ............................. TGTATGTATACCTGTTCTCCTTTTTTGTACTCTACA 1303216 29 96.6 37 .............T............... TGAGCGTGTGTTTGCACATACGCAAACACACAAGAAA 1303282 29 93.1 0 .............T......A........ | ========== ====== ====== ====== ============================= ======================================== ================== 15 29 99.3 37 GTTTTCTTTGAACCAAGTGGGATAGAAAG # Left flank : CATTGTCCTCTCTTGATTCATAATCAGCGTAGTATATGGTATCAACAGATCCGATACCATTTTTAATCAGGAATGCTTTTACATCTTTGAAGCTTTCTGAACAGTCGCTCCAACCGTGAAGGATAAGGGTTATCTCTTTCATTACTCCCTCCCCCATATTTTTAATTTCATATCAGATTAATAATTTGTCAATATACTACGAATAAATTTTTAAGAATCTTGATTTTTAAAAGAAGGATTATTACTATTAAACATGCCAGTTAAACGGATTCATGGCAACTGAATATGCTATTATGATGCATTTTGAGTAAGAAAGACTAAGATTTTTAATCCTTGATAATCAACATTTATAAGATAATGCTAATAAGTATAATTGCATTACTACAGGTTTAATGCAGATTACTTATTTTTGCAAAGATGTATAGAAGCGGAATGATCTTTCTCTAAATGGCTTTATAACTTGCTAAATGGCTTATTTTTTTATATCGATAGAATAGTGG # Right flank : GAATGGAAGTTGGCTTCCTCATCAATTAATGATACAGGATCAGAGACTTCTTTTATATTTAGAGAATCAAGGATCTCTCTAACAATCTGTCTTTTTACAGCTTTTTCTTCAGGGGTTTCATTCTTTAGCTTTTCCTCTAATTCATTGATAAATTCCTCTATTCTCTTCTCTGTTTTCTCCTGTTTTTCTCTTATCTCTTTGATTTTTTTCTCAATTAAATTATTGACTTCCTGAAGGCTAGTATTCTCATCAATCTTGTCAATCCCAATACTTCCCTTTAAAGTTTCCTCTTCTGCATCCGTAAACTCATAACCAGATCCACTTTCCAAAGCATTATTAACGCTTTCCTTTATCTTCTCTAATTCCTGAAGAATCTTATACTCATATGAATCTGGCTCTTTGTTTCCCTCACCATTATCTTTTTCTGTATCGCCCTTCTTCTTTTTCACACCTTTTACGGTATAAAGTTTTTCTTTAATTTCTTCTAATTGTCCATCTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTTTGAACCAAGTGGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //