Array 1 28388-29753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYPH010000019.1 Klebsiella pneumoniae strain CFSAN059634 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28388 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 28449 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 28510 29 100.0 32 ............................. TCGGTTTCGAGCGCGGTGTATTCCTGCCAGGC 28571 28 89.7 32 ..........-.TG............... CGATTACTGAGTCGTTCACGAACCGGCCACCA 28631 29 89.7 32 ........T...TG............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 28692 29 93.1 32 ............TG............... TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 28753 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 28814 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAACT 28875 29 96.6 32 T............................ ATAACTATCAGGGTAGATTCATGAAAAGGGTA 28936 29 93.1 32 ....C.......................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 28997 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 29058 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 29119 28 89.7 32 ..........-.TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 29179 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 29239 29 100.0 32 ............................. GCAGCGGCCTGACGATGATTGATATGAACGGC 29300 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG C [29311] 29362 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 29423 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29484 29 96.6 32 .........................A... CACTACCAGATCCGAATGGACACCCGTAATGA 29545 29 96.6 32 .............C............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 29606 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29666 28 96.6 32 ..........-.................. CACTACCAGATCCGAATGGACACCCGTAATGA 29726 28 89.7 0 ..............C.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 94.9 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTGTTTTGGGCGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 201640-204289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYPH010000010.1 Klebsiella pneumoniae strain CFSAN059634 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201640 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 201701 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 201762 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 201823 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 201885 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 201946 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 202007 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 202068 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 202129 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 202190 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 202251 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 202312 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 202373 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 202434 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 202495 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 202556 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 202617 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 202678 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 202739 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 202800 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 202861 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 202922 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 202983 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 203044 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 203105 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 203166 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 203227 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 203288 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 203349 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 203410 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 203471 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 203532 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 203593 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 203654 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 203715 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 203776 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 203837 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 203898 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 203959 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 204020 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 204081 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 204142 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 204203 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 204261 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //