Array 1 157583-157193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLC010000019.1 Enterobacter cloacae complex sp. P5RS 1701060013_S63_R1_(paired)_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 157582 28 100.0 32 ............................ AGGTTCCGTTGACGTAGTTGTACGTAAGTGCT 157522 28 100.0 32 ............................ GCATAACTTTCGTCGTACGCATCTCGGGAACG 157462 28 100.0 33 ............................ GAAAAAAACAACCCAACCATTAACAACATTGAG 157401 28 96.4 33 .....T...................... GACGATCTGGAAGAAGCGGCAGCCCTCGCTAAT 157340 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 157280 28 89.3 31 ...........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [157255] 157220 28 71.4 0 ......C.T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 7 28 93.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAATGAACGTGACGCGCACGCGTGGGGGGGACATC # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAACAG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 200-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLC010000025.1 Enterobacter cloacae complex sp. P5RS 1701060013_S63_R1_(paired)_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 199 28 100.0 32 ............................ AGGGAGGAAAGGAGGAGGGGATGGAAACCGAA 139 28 100.0 32 ............................ GTCGCGCTCAACCATTTTCCGGCGCTGTGCTG 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAGGCAGCTTAGAAAACAACCAAAAACAAGGCGGCAGGATGAACCA # Right flank : AGTACATCTATGATGCGGTATTTGCTCCCCTGCGTGCACTGCCGTACAGGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 393-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLC010000049.1 Enterobacter cloacae complex sp. P5RS 1701060013_S63_R1_(paired)_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 392 28 100.0 32 ............................ CGTGTTTCCGGCGCAGCTCTTGTTCTTTTAAT 332 28 100.0 32 ............................ GGTGAATATGTCCCGCCACTGGCCGTGGAAGT 272 28 100.0 32 ............................ TCTTTTTGCTCCTTTTTGTCATCCGTTGACAT 212 28 100.0 32 ............................ CGCGAGGCCGCCGCAGCTCTTGGGATTAACCC 152 28 100.0 32 ............................ AAATTTAGATGAGCTCGCGGGTAGTGGAGATT 92 28 96.4 32 ..G......................... AGCTACCTTTTACAAAGTTGTACGAAAGTGAT 32 28 78.6 0 ..G..........A.A.A.AA....... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAGTTTAAA # Right flank : AGAAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 74100-74727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLC010000011.1 Enterobacter cloacae complex sp. P5RS 1701060013_S63_R1_(paired)_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 74100 28 100.0 32 ............................ ACTGGCACCTGCCCCAGCATCCCAAAGATAGG 74160 28 100.0 32 ............................ TGGCGCACAGAGGGCGAGGCGCACGGCTACCG 74220 28 100.0 32 ............................ TGCGCGAAACCAGACCAGCGCACGCGGGACGG 74280 28 100.0 32 ............................ GTCCCGGCGGGGTTAGCCGGGATGGTCGCAGC 74340 28 100.0 32 ............................ AGGGCGATTTCAAACACGCGCTTATTCATCAG 74400 28 100.0 32 ............................ ATGACGCTGGCAACCGCCTTGCCGTTGATCAT 74460 28 100.0 32 ............................ GAACAGGCAGCAGAGCCCGCCCCGCGCGGGCT 74520 28 100.0 32 ............................ GGGGCAGGTTCCAGTAGGCAAGCAGTACGATT 74580 28 100.0 32 ............................ GACGAGCGAAACCGCCGATTTTACGGCGTACA 74640 28 96.4 32 .....A...................... CGCCAGACGTGGGGCGAGCAGGTAAGCGCAAT 74700 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTTCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGAGCCTACCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAGGTGGTGGAATTTGAGGAAGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTTGAAGATACAGAAACGAAGTGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCTTCTTACAGGACTGCTCCATGACATCACGCATTCTATGGTTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAGTTTGTGACGTCCGAAGTAGGCCCCTGACGCCACCGGCTAGACCCTTTTTTTTTATGATTACGTAACCTTTTGATTTATATAATGCGAATTTACGTACCAGAAAAAAGGGTTTTATGCAGGAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : ATTGTCAGTCTGATGAAAATAAAGGGCCAATGCGTTCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAGGTTGCAGCATAGTGCTTAAGTGCATCAGTTTTGTTCACTGCCGTACAGGCAGCTTAGAAATCATGGGGGTGGCCTGACAATGCTGAATTTTTGTTCACTGCCGTACAGGCAGCTTAGAAATTGTGAAGCACTATGGCGGTAACTACCAAGGAGTTCACTGCCGTACAGGCAGTTTAGAAAAAATCGAAGCGAGTGGGAAAAGAACAGTCACAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75044-75734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLC010000011.1 Enterobacter cloacae complex sp. P5RS 1701060013_S63_R1_(paired)_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75044 28 100.0 32 ............................ TCATGGGGGTGGCCTGACAATGCTGAATTTTT 75104 28 100.0 32 ............................ TTGTGAAGCACTATGGCGGTAACTACCAAGGA 75164 28 96.4 33 ....................T....... AAATCGAAGCGAGTGGGAAAAGAACAGTCACAA 75225 28 100.0 32 ............................ TGTCATATCGCCAATACTGATTGATCGACTTT 75285 28 100.0 32 ............................ GTGAACAACATTGAGCTGAGGTTGCAGTTAAT 75345 28 100.0 33 ............................ CACCAGCTGCATCCATGCCCCGAACCCCAAAAT 75406 28 100.0 32 ............................ TCGAGCGTCATCGTTGGGGTTGATTTGGATTT 75466 28 96.4 32 ..........T................. TGCATTGCTTCTGCGTGGATTTGATCGAGGGT 75526 28 100.0 32 ............................ CGACGCGATTCAGGTCACCGGCACAAGTCAGT 75586 28 100.0 32 ............................ CTGCGGAGCGGGGGGACCAACTTCTGAGGCGC 75646 28 100.0 33 ............................ CGTGTCGGAAGAGGGACAGGGAAACGGGGCGTT 75707 28 92.9 0 ................T......T.... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAAAGGGGCAGGTTCCAGTAGGCAAGCAGTACGATTGTTCACTGCCGTACAGGCAGCTTAGAAAGACGAGCGAAACCGCCGATTTTACGGCGTACAGTTCAATGCCGTACAGGCAGCTTAGAAACGCCAGACGTGGGGCGAGCAGGTAAGCGCAATGTTCACTGCCGTACAGGCAGCTTAGAAATTGTCAGTCTGATGAAAATAAAGGGCCAATGCGTTCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAGGTTGCAGCATAGTGCTTAAGTGCATCAGTTTT # Right flank : AGCCCCTCTGGGCTTTAATGCCGTGGAAATAGCGTTACTGTCCCATAGACAGTACAAGTAAACCCATTCCTCACAAATATTCATCTCGTCTATTTAAAACGAAATACCATCATCCACACGCTTTCCATTTGCAGATTAAATAAAAATCCCATTCAGGGGTTAATTATATTTCCGTGTATATATTATTTGTAAAAATAATACTTTTAAAAAATGTTGTATTTTTGTTGAGTTATCACAGAAATTTCCATTCATTTGATATATATCACATTTGTATTTCTCTCATCTCCGATAACATATCCGCATTCATTACCTTGAAATAAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACCATCCTGCATTCAAAACGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTGAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGGAAAGAGTCTTTTTACTGGAATATTCCCATCGCGAATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 85291-85438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLC010000011.1 Enterobacter cloacae complex sp. P5RS 1701060013_S63_R1_(paired)_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85291 28 100.0 33 ............................ GCAGCCGGTCACGGTGACCATCCCGACGCAGAG 85352 28 100.0 31 ............................ GTCCGGGCATTATTTACGATATGCGTGACCA 85411 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTAATCCCGGTAACGCGTAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAAAGTGCGTTATCAGCAGGTTTCTTGGCGGGTATCCAGGTTCTCATGTTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATTGGTTTTTTTTTGTGCAGGGTGGTTTGTGAGAAGAACAATGTTTTGACCCTAATTTTTAACGGTTGTGTAATTCATTGATTTTAAATGAGTATTTTGGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : ACATCCTGGTCGCCATCGTCGGGGACAACATCGGTGCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAGATATCCAAACAGCCCAGGTCTGAATAAACTGGTGCACTGCCGTACAGGCAGCTTAGAAATAGAGCAGCGTTATTTCACGCTCTCGTTTTCGGTGCACTGCCGTACAGGCAGCTTAGAAAATTGGCTTATTGAATCCGTATGTCTTGCGCATGTGCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAATAATTCTTTCGTTCATCCCGAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 85948-86155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLC010000011.1 Enterobacter cloacae complex sp. P5RS 1701060013_S63_R1_(paired)_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85948 28 100.0 32 ............................ AAGACAGCTTAACATTAGCTAAGACGGCTAAT 86008 28 100.0 32 ............................ TTTTGCGGCGCAGATATGCGTGTGATGAATAC 86068 28 100.0 32 ............................ TTACCAGGACAAAATGCACAAAAACATACTAC 86128 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGCCATCGTCGGGGACAACATCGGTGCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAGATATCCAAACAGCCCAGGTCTGAATAAACTGGTGCACTGCCGTACAGGCAGCTTAGAAATAGAGCAGCGTTATTTCACGCTCTCGTTTTCGGTGCACTGCCGTACAGGCAGCTTAGAAAATTGGCTTATTGAATCCGTATGTCTTGCGCATGTGCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAATAATTCTTTCGTTCATCCCGACTACGGGATAA # Right flank : AATGCACCACTCGTACGACCACGACGAAGGGTGTGCACTGCCGTACAGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //