Array 1 24646-23503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992887.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold8.12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 24645 36 100.0 41 .................................... CGTAATCGTACCCTTTTTTGTTTTGTTTTTTGTTCACAACA 24568 36 100.0 40 .................................... AATAACGGTACTATCGCTGTCACCAGTGATGTAAAGTTGA 24492 36 100.0 38 .................................... CTTCAGCTTCCATTGTTTTAGAAGCTATTTCTTTTGGG 24418 36 100.0 36 .................................... ATCACAATTAAAAACAACCGTGATGAAGATGGAATC 24346 36 100.0 37 .................................... ATTCTCGCACAACATCACCGTTCTGTGGACTAAATGA 24273 36 100.0 38 .................................... GAGAAGGCTTGCTTTGTGGGCTTCAAGGAGCTCTCTGA 24199 36 100.0 37 .................................... AATTGAATATCTTCTCTCTAGTTGCAGTTATCAGGGT 24126 36 100.0 38 .................................... CCAATCCAGCAGCCATCATCCTGCTCTTCCCACAAGGT 24052 36 100.0 37 .................................... GTCAACAGAGGTAATAGAGGTCAACAAGATATTGCAA 23979 36 100.0 38 .................................... TTTCTTAGGATTTACGACTGTGCTTCGAGTATTTGCAT 23905 36 100.0 35 .................................... TGTTGACAAGAATCACTCGTGCAATTTTTGAACCC 23834 36 100.0 36 .................................... CTTCCAATACCTCTTGCGGAGTGAATCTTTTTCGCA 23762 36 100.0 38 .................................... GATTGATTGTCGGAAAACCTGCGTCAGTTGCTTGCTGA 23688 36 100.0 39 .................................... CTGAAGATAAAAAAATAGCTCTCAGTTATTGAGAGCTAT 23613 36 100.0 39 .................................... ACGAACATATACCCCGCCACTGTCTTCTTATTAAGAATA 23538 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 16 36 100.0 38 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GTTATCCAAGCTGTTTTTGCTAGTTTAATTGTCACTACTCTAGTTTTGGTTGGTTTTAGCGTTAGCTAAGATTTTCAACTTATCGCTATATCTCTGCTTTACCTCGGTAGTTAACGCCGGGGTTTTTTGTTGGGTGCTTTTATATGAAGTGGCAGTTATATAATTAAGAAAAATTAATTCAGCCTGCTAAGGTTTCACTGCATTTTGTCAGAATCTACTTCCAGAGTGTTAACTATTGGTGTTCAAGAACCAGCAACACCACCAAAGTATTATGTTATCTAGGTTTTAGGATAATTAAGGAGGTTTTGTAACATGACTATCTACACACCTCACCAAATCGCCCAAACCCCTATTCTTTCGTTGAGGTGTGTCGATTGCTTGCTGTGTAAGGATTTGAGCTATGTGTTTGATTAATTTTTCGCCTAGATTTACAATCTTTTTTAGAGGTGTGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : GCAGGCAGGCTTTCTACTCCAGAGAGTGTCAAAAGCTCGTTTGTTCACCTTCTCCTGTGCCTGTGGTTGCTTGTAATACTGGATAATTTCTTCAGCCTCCAGAAGTTGGTTGACTTCGACTATCTGGGAATACTTGGTCATTGCTTTATGCTATGCCAAAAATTCCAAAAATCGCATTGTCAGAAAAACTTAAATATTAAAAAAAATCACTCTTTTTATTGCCCCCTTCCAAACGCTACAATCTGCCGTATTAGGGGCAATCAATATTTACGACTGCAATTTATCACTTGTGAGCAAAACCCGTATTATTGCACTATTTAACCAAAGTGGTGGTGTTGCTAAAACAACGCTAACTCAAAACTTGGGCTACCACCTCGCCCAAAAAAAGAAAAATCGCGTCTTGCTAGTGGATCTTGATCCACAGGCCAGCTTAACTACCTTCATGGGACTTGAACCCGACGAATTAGACCAGACCATCCAGCAAGCAATTGTTGATAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 42533-41671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992890.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold5.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 42532 37 100.0 36 ..................................... ATCAAAGTTAGCAGATGATACACCTTTTACAGTCAA 42459 37 100.0 39 ..................................... AAATTTCAAAATAAATTAGAGTCTATCGTTAAGTTAAAA 42383 37 100.0 39 ..................................... CTGAAGTCAGCCAAAGCAGCCTAAACACTGCTACCCTTG 42307 37 100.0 37 ..................................... TATTTACTAGGATCATCGCCCTCTTCATTGCACCAAA 42233 37 100.0 39 ..................................... CTGAAGTCAGCCAAAGCAGCCTAAACACTGCTACCCTTG 42157 37 100.0 37 ..................................... TATTTACTAGGATCATCGCCCTCTTCATTGCACCAAA 42083 37 100.0 39 ..................................... TTTGATTTGGTTGATTTCAGATTCGGATGCGATCGCAGG 42007 37 100.0 42 ..................................... AATTCTTGAAGTAGTTGAGACAAGGACAATCGAAAAGCGTTG 41928 37 100.0 36 ..................................... GGGATCTTCCCTTGTCCATCCATAAATATGCGATCG 41855 37 94.6 37 .......CT............................ GTTTATGGCATGTCCTGCTAAGAGTGTTCCATACCTG 41781 37 91.9 37 .......CT.............A.............. TCTACTTCATGGATATCTTGAATTCTTCTTAGATTTT 41707 37 94.6 0 .......CT............................ | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 98.4 38 CTTGAAATGTAGCGAATCCTGGCAACGGGATTGAAAC # Left flank : GTTTACTGTTGATGAGGTGGAGTTTTTACAGCTTTATTCTTTGGTGGTACGTGCGCTGCGGTTGTGTGACCAAAGGTCTGTACAATTGATTTAGGTATGGGGCGTTGGGCATTGGGCATTGGGCATTAGGCATAGTGATGGTACATCTTCTTTCTGCCGAACAACTCTATCTCGTTGTGGGTGTGGTTTTTCATGAGTAGCTGAGTGACTATTGTGCCTCTGTCCCTACATAATTTTTTCCAAAAGTCTGGACATTGTTCGAGAATACCCGTATTATATATAGTGTTATTAAATTGATGTTTGGCAAACCGAAGCGGAGGGTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTTAATAGTTACAGCGTTTGGAAGTTTGCGACAAATAGGAATTTGTTGCAATAAGTGAGGCTGAAATGAGGTCATTTTTGAGGTCTGCCAAAACTGCTTGTAGAATCCTTGCTCTGTAAGGGTTTCAGGGGGCGGA # Right flank : GCGATAATTTGGGACGAATCAGAGTATAACCAAACTCAGCCAAAATTTCCTCTGGCTCATAAGTCATTTCAAAATAGGAACCGAAGGTGTATTCCCTATTTTCCTCAAGAATTCTCGGTTTCGGCATAGCGATCGCACTTACAAGCATTTATTCCTATGGAATGCTGAATATAGTTTTATCATCAAAAGGGAAAGCAAGTGGGCTGTGGCGATGGGATATAACTTTCTGTTCGATTAGTCTCAAATCTATTTCTAACAGAATTGACTAATCGGTAAGTCTTTAGTTTTTTGATCTTTATTGGGGAAAGATAAGCAGGTATTGGAATACCCCTATTCCAACCCCATGCTATAAATAATTCAGCAAACAACACATGGCTTCACGCCACATGATTAAGCAACTATTCGTTACCAAGACTTACAGTAATTATGCTGATACATTTTTGTTGTTGGGTTTAGCACATCTTGCCGAATATGCTTTGCAAGCAAGCAAGCAAAAAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGTAGCGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 83727-83169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992891.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold4.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 83726 36 100.0 40 .................................... GCGAGTTTATCACGGGTCCAGACGGAGATATTATCTGTCA 83650 36 100.0 36 .................................... AGCAGCTGATGCGGCAGGGTCTGCGCCGGGTTGCTG 83578 36 100.0 43 .................................... GGTCGGGGATGGTATAATCTGGGGGACAATTATGAATTCTTTG 83499 36 100.0 42 .................................... GGTTTGAGGCACTAGAAGGGCTGTTGTTGGAAAGGTTTTGGA 83421 36 100.0 39 .................................... GATTTTGGTAAAGCGAGATTGACTGATTGAGTAATCAAA 83346 36 100.0 35 .................................... TAGAGCTAGCACTAGGACTGCCAACAACCTGTGTT 83275 36 100.0 35 .................................... TTCTAGTTCCGCTTCTGCCGGAGGAAACGTAACCC 83204 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 99.7 39 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : TCTAAATGTTAGTCGTTGTTGTATATGATATTCCTGATGATAAAAGGCGCACGAAGTTATCCAATTTTCTAGAAGGTTATGGACGAAGAGTCCAGTTTTCTGTGTTTGAGTGTTTTTTGAGTTTGGAGGAAATGCGACAACTTTATATAAATGTGAGAAAGTTAGTTAAACCTGCGGAGGATAATGTGCGGTTTTATTGGATATCCCAAGAAGCTGTTGAGAGGGTGTTAACAATCGGTGGTGAAGCACCCCAAGCACCGCCAAACTATTACGTAATCTAGGTTTGAGGCTATTTTAGGAGATTTTTGTAACATGACTATCTACACACCTCGGCAAATCGCCCAAACCCTTATTCTTTCGTTGAGGTGTGTCGATTGCTTACTGTGTAAGGCTTTGAGCTATGTGTTTGATTAATTTTTTGGCTGGTTTTACAATGTTTTTTAGAGGTGTGTCGATTTGCAGTCTGAAACCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : AATTATGATACCTGAAACTGCAATGATTATTCTGAAAATGCAGTTTCAGGTATTTTTAATTATTAATAAAAATCAACTATTAATGAAACCAATCAATATAGTCTTCATGACACTCAATAATGTATTTGTGGTAAAGACTCCTCATAGCGATCGCAACACCTTCAATTGATGCGCGTCGCCAAACTGTTAGGCGATCGCTTCCGTTGGAAACTCGCGTTTCCAAGCGTAGGTTTTAATAAAGCATATCGTTCATACCCAAATAAACAGCAATTGGTGAAAACCTATGCTCACATCTCGTCGTGTCCTAATTTTTGCAGACAGCGATAATACTTACCTAGCAGCACAAAGCTTCAACAGAAAAATCGACTGGCAAAAAATATGTAACTATCTTGCAGATCCCAAAGAAGGTAGAGAATTAATCGAAATGGTGATTTATGTTGGTTTACCACCAGCCAGAGAAAGATTTGAAGAACAACGCAAAACCAAAGAGAAATTTGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 90725-90035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992891.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold4.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 90724 37 100.0 34 ..................................... AAAAGCCTAAGCTTGTTGATGGTCAATTACAGTT 90653 37 100.0 37 ..................................... ACATTCACGAAACCATGAGCCAAAAGCCATTTTTAAG 90579 37 100.0 44 ..................................... CTAGTTTTGGCAAGTTTCATGAATGTCACATTCATGAAATTAAG 90498 37 100.0 33 ..................................... CAGCATAACGAAGCTCACCTCACGAGAGTGTGG 90428 37 100.0 35 ..................................... TAGCTTCTTAATTGAAGACCTCGTTGGGGTACAAG 90356 37 100.0 34 ..................................... CAGGTGCGATCGCACTGCAAAATGGTTATTGAAG 90285 37 100.0 36 ..................................... CAAGAATACCTGGCTCGCGAATCAATGCAACAACAG 90212 37 100.0 33 ..................................... TAAGGTTCCAGTGATCGGTCATGGTGCGATCTT 90142 37 100.0 34 ..................................... GCCTCTATTGGATTTAAAGACAGCAAGAAATGAA 90071 37 97.3 0 ...........C......................... | ========== ====== ====== ====== ===================================== ============================================ ================== 10 37 99.7 36 GTCTCCACTAATAATGTGGAGGCGCATAATTGGAAAC # Left flank : TAAATACAAAGAATATGATGATGATATTCGTAATGGTTTAATGCATAATCTTTTGGGTTTTAACGAGCAAGAAGTAATTAAATACCTGTTAGGTAACTCAACAACATCAACTTACACAGATGTTCTGACTACATACCAAAAAGAACTAAAAGATAAATTTCTCAATGCTATCAAGAATTTAGGTATACCTTACAATGAGAGAAACTTGTATGACGAACTAGAAGCGATCGCCAAAGACATCATCTAAAACTGCGCGAACCAGGAGGTGTATTTATCGAACGCTTGTTATATAACCTCTAAAGGCTTATCAGCTATAGCTTTGGAGTATTTGCGGCAAAAAAGAGGTTCGCGCAAACTCTGTAATGTATACCAGGAAAGTGTTTGAGGTAATTTTGATGCAAGGAGGACTTGACAAGCGATCGCCCAAACAGTACTTTTTAATTAGATCCGCGCAAACGGGTGTCAAAATCCTTGTATATCAAGCCTTTTAGACCCCAACA # Right flank : AAACTGCAAGAGCGATCGCTCTTGCAATCCTAAATCATTCATGAGAGGCGAGATCCCCGACTTCGCAAGAGTTGTCGGGGATCTAAGATTCCGTGTTTTCTCACAACTCAATTAGGATTGCTATAGTCTCCAGTAACAGCATGGAGACTTTTTCGGGTGGCTGCCCTTTTCATACAAATTCGTCAATCGCATCACAAATAGACGAATTCCTACTCTTCTCCAACAATAATAAAAACCAAATAAGAATAAACCCAACGTGTAGGATTGCGCGCACAACAGAGGGAATTTCTCATGGATTTACCCGAATTATTCCCCCATTTCTTCATCCTTCAGCGATTAGTAGATGGTTCGCTCAACCAGAGCCAAAACCTAATTACAGCAATGCGACGCTGGATTTTAATCAATTGGTTTTATGGAGAAGCAAGCAAAAATTTGGAGTGCGATCGCTATCGTGGTATAACCTTCAATGAATGGAGCGAATACTTTTTTAATCAAGATTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAATAATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 24388-23912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992893.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold2.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 24387 37 67.6 37 ...TC..A.A.AT...A..C.TTCG............ ACATGCTGTACGATAATTAGATTTCCTTCGCGCAGAA 24313 37 67.6 36 ...TC..A.A.AT...A..C.TTCG............ ATGTTCACCTGCCGATTGAGGCTACGGCGACGGTGA 24240 37 67.6 36 ...TC..A.A.AT...A..C.TTCG............ ACATTACTAAGTTGTTAGTAACAAACTATCGGATAA 24167 37 100.0 34 ..................................... ATGGATGGAAGCCAGGACAGAAAGCAGAGGTTGA 24096 37 100.0 38 ..................................... TTGCCAGTCATGGCTGGAGTCCAGTCCAACCACTGGAG 24021 37 100.0 36 ..................................... ACGATTGGCAATGAGTATCGTCGGTCACGGATTAAG 23948 37 91.9 0 ...............................A...CT | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 85.0 36 CTTGAAACTTAGCGAATCCTGGAAACGGGATTGAAAC # Left flank : AGTCCAATTGAAAGACCATCAAAAGGCCAAAAAAAATTTTTTAGCGGTAAACAGGGAGAACATACTTTAAAAACACAGGTAATCATCCATCAAAAAACTAGCCAAATTATCTGTTTAGGGCATGCAAAGGGGAGAATACATGATTTTAGGCTATTTAAAAATAGTGGGATAAAATTTGGAGAATTACTTAAAGTCATAGCGGATAAAGGCTATCAAGGAATTACTAAAATTCATCAATTAAGTGAAACACCAATTAAGAAACCAAAAGGAAAAACTTAACAAAAGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCTCCCACCCTCACGATTATCATTTTCATTTGAGTGATTTTAAGTATTTTAGCTGATTGACAAAATGCGCTTTATCTTAACCTATCACCGATGGCTATAGGCTGCCCAT # Right flank : TACGCATTGACAAATTAGACAAACAATGCAGTAAGAGAAGTTAGAAAAAACAGGCGATCGCTAATCATTCTTGGGCTGGAAAGACGGATAATTTACGTCGAGAGCGTATTCAGGGGTTCAGACCATTAGAGCGACTACCAAGCCATCTACTGCTAAGTGTGATCTCAACACTTACACTTTGTTCTTGCTGGCAGAAGCAAAATATGCAGGCTGTAGACGTTTGGCAGACATCATGGACGATTTGTCTGATGATAGCGTCAACAGATTCTTGTTACGTGAGCGGTATGAACCCAAGGATTTATTTAATGAAGTCAGCCCACATATTAACTTAATAGGTGGGACATTAAGTGGAGATGATACGGTAATTGACAAGCCACATAGTGACCCCAAAATAACAGAATTAATTGGATATTTTTATTCAGGAAGGCATGATCGCGCTGTCAAAGGAATTCAATTAATTACCTTGTATTACACGGATTTGTCAGGCAAATCTATGCCTG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:0, 3:3, 4:0.25, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGAATCCTGGAAACGGGATTGAAAC # Alternate repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 3100802-3102016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3100802 37 100.0 38 ..................................... TTAACTAGTCGCACATCAAAAAGACAAAACACAGATAG 3100877 37 100.0 42 ..................................... CCTAAAAAGGGCGGACACAGAGACAGCGCTTTAGGTACATGG 3100956 37 100.0 34 ..................................... AAGCCAAGTTGAACAAGAACGCGATCAAGCTAGG 3101027 37 100.0 34 ..................................... GAGATATCCATTTTTTAGGTGATCAAGCGCCCAA 3101098 37 100.0 41 ..................................... ATGAAGTGACCGTGATAGCCCCTCCCAGTGTTTGGGAAAAA 3101176 37 100.0 34 ..................................... TTTGAGCTCAACCCGACCAAGATATCCATAAAAA 3101247 37 100.0 33 ..................................... GACCTTGAAGTCACGCATAGCCAGCACTATCCT 3101317 37 100.0 34 ..................................... ACTGATGTTCCCGTTACTGAGTATAGTGGAGTAC 3101388 37 100.0 34 ..................................... AATATACTGAGATAGCTATCTCAGTATAAAAAAA 3101459 37 100.0 35 ..................................... TACTTAGTTCTGGTGTGGGTAGGTCAAAAAAGTTT 3101531 37 100.0 38 ..................................... ATGAATACCCACGACATTAAGCTAATGAGGATATTTAA 3101606 37 100.0 39 ..................................... AATATAGAGAATTCTACTTAGAGCTTAACAAGCAAAAGC 3101682 37 100.0 40 ..................................... ATATATCGACCTAGTAAAGTTCATGTTTGGGGTCAGTACC 3101759 37 100.0 33 ..................................... GCCATGCAAGAAGACGGACAAAACAGAGTCCCG 3101829 37 100.0 41 ..................................... CACGAATTAATGTAGACGATCGCCAATCTTTTTTACCAGAT 3101907 37 100.0 36 ..................................... ACAAGCAACAACAGGGCCAGGATGACTTGCTGCTAA 3101980 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 100.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGATGTCCAAAGTGCAATTAATATTGTTGGCTTCGATCCATATTTAGGATATCTACATACAGAGCGTTATGGAAGACCATCATTAGCACTAGATTTAATGGAAGAATTTCGTCCTCTAATTGTCGATCCAGTAGTTTTAGCTGCTATTAATCGCCGTATTCTTTCACCCACAGATTTTATGACTGAACCAGTCAGTAATGCTGTTTCTCTGACGAAAGAAGGGTTACATAAATTTTTACGACTTTATCAAGAAAAGAAGCAAATAAAATTTAAGCATCCCGTCATGCAAAAGCAATACACTTATCAAGAATCCTTTGAACTACAAGCAAGATTACTTGCAAAATACCTCATGGGCGAAATTGAAAAATATCCACCATTGGTAATGAAGTAATTTGGTCAATTGTCAATTGTCAATTGTCATTGGTGTTTATTCTCTCCCGTGTCTCCCCCCTCTCCCTTGTCCCTCCCCAAGTTCCAGTAAACACAAATGTATCTAAAGG # Right flank : CTTGTCAACAACTTGATGTACAGCGATTAAGCTAGAAAATAGGAATATCAACAGGGAGACGAATGTGAACAGTATAGTTCACTGGCAACAACGAGTAGGGAATCAAAGAGATTGGGTATGGCGGGGTTGGCAAACTCGTTATACTTATATTCGCCCTAGCCAAAATCACCATAACTCAACCCCCCTAATTTTGCTGCATGGGTTTGGTGCTTCCATAGGACATTGGCGACACAATTTAGAAGTATTGGGAGAACAACATACAGTCTACGCGCTAGACATGTTGGGTTTTGGTGCTTCCGAAAAAGCTTGTGCGAATTATAATATCCAACTTTGGGTAGAACAAGTTTATGACTTTTGGAAAACATTCATCCGTCAGCCTGTAATCGTAATAGGTAACTCCCTCGGTTCGCTAGTTTCCTTAGCTGCGGCTGCTACTTATCCAGAGATGGTGCAAGGTGTAGTAATGATGAGTTTACCAGATCCATCTTTAGAGCAAGAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 3252706-3251966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 3252705 37 100.0 45 ..................................... ACAGCTGGCGGTGGACAGTATGTTTTTCGTCTTAAAGACAATCAA 3252623 37 97.3 37 ....................A................ GCCTTATAGGTACCTTCCTCCGTGCTGTTGCGCTTCA 3252549 37 100.0 42 ..................................... ATCAAAATAGAGGAAGTTATTAAAATCCCCAATTTCTGACGC 3252470 37 100.0 43 ..................................... AAAATGATTACAGCAATAGACGCAATAAACGCAATATGTAACC 3252390 37 100.0 37 ..................................... AGCAAGTGCAACATCGGTATTAGCGAGTGCATTTACA 3252316 37 100.0 37 ..................................... GAAAATCCAACGCCTTTTCTCCTGCTCCAAGAAAGAG 3252242 37 100.0 49 ..................................... ACCGATGCCCACAGGTAATTAACGCGGGCACAGGGGTTAGACAAATCCT 3252156 37 100.0 37 ..................................... ACGAAGGGTAGATGAAGATATATTATTGGGATTTGTG 3252082 37 97.3 43 ..............................T...... CCTTATAGGTTTGCTCTCCAAAACCCCATAATTGCGGAACAGG 3252002 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ================================================= ================== 10 37 99.2 41 GTCGTAGACTACCTTCACCCCTAACGGGGACGGAAAC # Left flank : TTGGATACAAATATTTTGAGCCATCTTTTAGTAACGCGCTGGCTACCTTTACTCAAACTTAGCGAGGATAATCTGCGCGTTTATCCCCTTGATGCAACGGCAAAACAGCAGGTGCGAGTATATGGTAGTGCCGCACCATACGAAGTGCCAGATTATTTAATTTTGTAAAGACTAGAGTTTGGAAATTAACGGGGATATGAAGGCTGAAACTGCCTGCATATCTACTTTTTCACGAATGTAACCAATTGTAAAGAGAAGCGTGAAAATGACGCAGTGAGGATTCAGAACTATGAATGAGCCAAAGTTTATAAATCAAAGAAAAGTTAGATTTTTTAGTTTGACTCGTGGCTGTTTTGCTGTAATATGAAAGCTGAAAGTAATTTTTGGCGCTAAATGTTTTTTGAGATGTGTACTGTACAACTAGGTTACATCGCTGCTTCCGTACGTTGGCGCAACTGTACCTTGAAAACTAAATATAGCAAGAGTTTCCACAGGGTAGG # Right flank : AAACGGTGCATAGCAAAATCTTACGGGAATCTGAGGCGGGAGTTTTCATTCACTTCCCCTGTATGAGGACGAAAAAAATACTTCCATATTGAATCTTGTTGAATGCACTAAGTAAGTTGGCGCTAATATTTATAGCTATGTTAAGAAATTTCAATGTAGGGTGCGTTATGCCGTAGGCTAACGCACGGTCAAGAATTCAAGGTGCGTTGCGCTGTGCGACAACGCACCCTACAGCTAATTTATATTTCTTCATATACATTGAATTTTTCCCGCCGACTTACTTTTGGACTTTGGACAAAAAAGCCAGTTCGCGTAATATATCCGCGAACTAATAGGTGATTAATCTTGTTTATATTTTTCAGCCTCTTCTATTAAATCTGCGGAACCAGTGAGTAAGGTATCGATAGCTCGTTGTAGTGCTTCAATTTTTGCTCGTGTTGCAACTTGTTCAACAGCCAGAAGGTAGGCAGGGCTACCAGCTTTGCCAAGATGTTTATATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAGACTACCTTCACCCCTAACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 3259650-3258292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3259649 37 100.0 36 ..................................... CACCGTCAGGTAAACTACGGTGAAATTGAGTAACGC 3259576 37 100.0 36 ..................................... ATACTCTCTGAACTTTTTGATGGAATCATTCCACTC 3259503 37 100.0 36 ..................................... AATTGGCAGTACTAAGCGGAATGCCCACATCCGCAC 3259430 37 100.0 40 ..................................... TGAGGTAAATCGCCCTCCCAAGGGCGATACTTATAGTCAG 3259353 37 100.0 37 ..................................... AGTTTATCCGTCGTTTTTACATTCAGGGTAAATCAGA 3259279 37 100.0 34 ..................................... AAACATCCGCAAACTGGAGAAGAGCTAACGATAA 3259208 37 100.0 36 ..................................... GACTTTTGCAATCTATCAATACCGCATTCTGAAGAT 3259135 37 100.0 36 ..................................... CTGGATCAATCCCATGGCTAACTAGGGATTGAATAA 3259062 37 100.0 36 ..................................... CAGATGCGGTAATAATTTCAGCTAGATCATTGAATC 3258989 37 100.0 36 ..................................... AGACAATGGTGGACTACCACTGTACGCATATCCGTG 3258916 37 100.0 38 ..................................... GTCTAATACCCCCGTCATCTGTAGCAGGTATCCAAATG 3258841 37 100.0 34 ..................................... CGGTAAGTCCAAGGTCGTAGACCTGGTACAACTT 3258770 37 100.0 35 ..................................... AATGCATCGGTATTGCACTGAGATTGCAGGACTTC 3258698 37 100.0 35 ..................................... GGCGATCGCCAAATTAACCACGTCTTCATCAACAG 3258626 37 100.0 34 ..................................... GTACCTTCTATTCCCAGTGAAGACGAGCCAGGGA 3258555 37 100.0 34 ..................................... AGATTTAACTTTAACGGCAGTTAACTGAAGTTCA 3258484 37 100.0 40 ..................................... TCTACTGAAAACATAGGCAACACAAGGTAGATGCACCAGC 3258407 37 100.0 42 ..................................... GCGGCATCACCTGTTATAATTCCAGACGCTAAAGCAGTTTGA 3258328 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 19 37 100.0 36 GTTGCAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : TCAGCATCTTGACTCACCACACAGTTGTTGGAAGCTGGACAAGAACTAAGATAACCATTGGCGACTCCCAAGCCAGAAGCATAAGCCCAAGTACCAGCAGGAAGTATTGACAGGGTTAGGAAGATGACAAGGGCGAGACTCCACAAGAGTCGCTGTGTAAACTCTCTTAGCAGACTGAACATGATAAATTCACTCCTCAATTAATAGCACTTTCCTTATAATAGGTAGCATTATTTCCAAAAAACACAATTTGCGCGAAAGGTAGGTGTTTTTCTGAACATGTCAAAAATATTGGCTGAAACTATTACTATGACTGGGTTTGAACCTTGTTGTATGTATAATGAGGTTTGCGGCATCCCCAAAAAGCTCGCTATGACTAGATTTGAAGGATTTTTTCTCAGCGATCGCTTGACACACCAACGGCTGAAAAGGTATATTCTCTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCCAGAATGAGCA # Right flank : CAATTCTGTATGAAGATGTGCTGACGCGCAGGAAATAAAAAACAAACCGCAAAGGACGCAAAGGACGCGAAGAGAAGATGTATAGAGAGAATTTAGCGCAGTTTCATAAAGAAACGATATAAAGCTACGCCATCGCTCCCTAAAACAGATATTTCTAGCAAGAATAAGACCAAAATCACAGACTTGTCTGTCCTAAATCACAAATTTTTATCTGGAAAATTTCTGTAAAAACTTGGAGATTTATATAGAGGTAGACAGTATACAGTTGTGTAGAATCAACCTCAAACATGATTTTATAGATAATTAAGTTCCAGGAATATCAATGATCAACCGTGTTTTGGATTTGATTTTTATAGATTCCTTTGCGTTTGTCATTAATACAATGTTTGGTAAATTGCTTAAAACTAAAATATGCAATTATGCGAGTGATGGACAAGATAAACACTGTATTGAAGATGAAGAAAATACACAATAGGCTAATGATGAAGGATTTGCAGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 4 3432410-3431353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3432409 37 100.0 35 ..................................... GGGAAGATGAACGCATCACCCCCAGCCCCGCCCCG 3432337 37 100.0 35 ..................................... GTCCTGTATCAAACTACGTAAGGTGATACGGATAA 3432265 37 100.0 35 ..................................... ATGCCTGTAAATCGCTCCAGAGGAAACAGCGTCAT 3432193 37 100.0 38 ..................................... GTAAATCTGGCGGCCCTCTTGGCGCTCGCCTTTTTCAT 3432118 37 100.0 36 ..................................... CCAACTTTTTTACTTTGACATATGTAACAAACTTGA 3432045 37 100.0 34 ..................................... CAGTCGGGCAGCCCGCCAGTCCAGGGTAGCAACT 3431974 37 100.0 35 ..................................... AGAACTTGACCCCGACGCCTGCTTCTAGATGTTCC 3431902 37 100.0 34 ..................................... TCCTATTATTTTCACGACGAGGTTTACGGGGATG 3431831 37 100.0 40 ..................................... AGCTTCACAATATAAGGATGGTTGGGATAACGAAAGAAAG 3431754 37 100.0 35 ..................................... CCTTAACTCTAATGCTTCTCATTTTTTCTTGAATT 3431682 37 100.0 36 ..................................... AGACTTAAGAATAAGTGCGATCGCATTTATGATTAT 3431609 37 100.0 37 ..................................... TTCGCTCCAATCAACAGGACGTGAATTTTGTCTTGCA 3431535 37 100.0 34 ..................................... TTCTAAATAAACTGCCTGACATGGTCAGCTTTAA 3431464 37 100.0 37 ..................................... GTGACTCCCGACGGCGATCGCTTCGGAATTATTCATG 3431390 36 81.1 0 .......................C-.CT.C.C....G | T,A [3431355,3431358] ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.7 36 GTTGCAACTCACACAAATCCCTATTAGGGATTGAAAC # Left flank : GATGCTCCCTAATTATCTATCTAATTCCATCTACCAAAAATAGCGTGAATAACAGGATGAGATCGCTAGCATCTGGCATTTTGGCAGAAACCAAATTTATAGGCTTTTTTTAGCTATATATTAACTATTATCCCAATACACTAATTTTGATAGATTTGTAGTAGGGGTTTTAGCCCTTATTTAATTGATTGAAAATCAGTATGGCGGTATAGGGATTTTTCCCCTGACCATGAACTCTTTTAGCCTATGATTGCGCCAACCTGTAGGTGTTTGAAACCAAGACTCGAACTTTACGCCTGAAAGCTTTGCCTGTTCTAGATTTGAGCCACTCAAAACAAAAAAGAGGTTCGCGCAATGTCTGAAACTCCTGCTAAGAAAGCTTTTGAAGCGATTTTTTCCGAACCACTGTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCCAAATTGAGCA # Right flank : ACAAATCAATTGACATTTAAATCCTGTAGAGACGCGATATATCGCGTCTCTACAACCCCAAAAATATGACGAAAAATCCTATCCCTTGCAGTATTGACACAAATTGCTATTCAAGTTTCTGAGTCCTGAATCAAGTTTTTGAGTCCTGAATCAAGTTTCTGAGTCCTGAATCAAGTTTTTGAGTCCTGAATCAAGTTTCTGAGTCCTGAATCAAGTTTCTGAGTCCTGAATCAAATTTCTGAGTCCTGAATCAAGTTTCTGAGTCCTGAATCAAATTTTTGAGTCCTGAATCAAGTTTCTTAGTCTTAAATTAGCTTCAAAAGTGATAAAAAAGATTTTTAAGGCAAAAATCTAGCTTAAGTCTTGCAAATCTCTTATTATCATCAAATTTCACTAGAATACCTTCCAATACTGCTTGGAGAAGATAAATCGATTGACATTTAAAATCTATAGAGACGTTGCAGTGCAACGTCTCTACATGGCAAAATTCTCCTCTCAAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTCACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 4565310-4567080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4565310 37 94.6 38 ..........CA......................... AGGTGTTGCATATTTACTCGGTTCAGGAAGCTAAAAAC 4565385 37 94.6 39 ..........CA......................... GGATTACTTTTATTTTGGTTAAACGATTTTTATTCAAAA 4565461 37 94.6 37 ..........CA......................... AGAAAAAGGGAAATGCTATCATTCGCGACATGGTGAG 4565535 37 94.6 35 ..........CA......................... CAACCATCATGCCAGATTTAAACTGAACACCTAAT 4565607 37 94.6 38 ..........CA......................... TTATGGGACACGCCTAACTCCTCTGCCAACTCACGACT 4565682 37 94.6 36 ..........CA......................... TTAGCTGCTGACACTGGGGCGAGTGAAGTCCTGGCA 4565755 37 94.6 33 ..........CA......................... TTGTCACCTTTGAGGGCGGACACCGGGAACTTA 4565825 37 94.6 36 ..........CA......................... GTAGTTCTGAACCGCGTTCAAGATATCTTCCCAACG 4565898 37 100.0 34 ..................................... TTCCTGTATTTCAATTCAAAGTACTTTCGATTCT 4565969 37 100.0 35 ..................................... CCTTGCACAATATAAGAACCGTTTAACCCTCCTTC 4566041 37 100.0 33 ..................................... AGTAAAGTATCGCAGGATCGCAGAAGGATATTG 4566111 37 100.0 35 ..................................... GCAGAGATTCGCGTGCTTGGCGTTCGCTATCTGCT 4566183 37 100.0 34 ..................................... GACGATAAGTAGGTATGCATTGGAAAAGTTCGGT 4566254 37 100.0 34 ..................................... TGTAAAATCTCATCTTCTAGTTTTGCTAAGTTGA 4566325 37 100.0 34 ..................................... CAATGTAAACTACACCTGGTAAATCAATATATTT 4566396 37 100.0 34 ..................................... AGGATAATCTTTCTATGGTCACCAATGTCTACGG 4566467 37 100.0 34 ..................................... CCATCTGGTACTAATTACGAATTTAATGATGGTT 4566538 37 100.0 36 ..................................... TGCGGAGGGTCAACAAACTTGCAGTTTGCGGAGGGT 4566611 37 100.0 36 ..................................... CCTTGAATAATCGCTTTGCAATTATTAAATTTAACC 4566684 37 100.0 33 ..................................... GCCAACATAGCGATCGCCTACAAACACCAAGAA 4566754 37 100.0 34 ..................................... TTGCTGTTGAAAGCAGTCAGACGCCAGTCTTAAA 4566825 37 100.0 39 ..................................... TGAATTAGTCGAGAAGTCTAGCAAAGAAGACGACGTAAT 4566901 37 100.0 34 ..................................... TTCACTTTCATCACCAGCAATGTATGCGAACAGA 4566972 37 97.3 35 ....................T................ ATAATTACACCTAACAAAACCATCTTTCTTAGATA 4567044 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 98.2 35 GTTGCAACTTTTATTAATCCCTATTAGGGATTGAAAC # Left flank : CAACTAGTCTATTATTAAGTTTTGGTGTTTAAGTATAGGAAAAATAGTATTGTTATACTATTTTTTTATCTAGTCTTTTATCTACTGCTTAACCAGTATTTTACCTGACACTGGCCGTGTGTGTATCCTTAAGGGACTTGCAAATCAAAAAACATCCAATTTGTGGGGTGCGCCATACTCTAACAGGATTTTGGATTGACCCCCAGGATTTAAATGCCAATAAATACTACAGTGTTTTTGGCTTGATGACGGTGCAGACCAGTAGGTGTAGAAAAAAAGCAGTCAATTTTTGTGGCTGAAACTCTTATTCTGTCTATGTTAGAAGCTGATTTGATGGTAAATGAGGTCTGCACCTTTTGTGTAAATCTTACCCTGACTAGGTTTGAGCGATTTTATCCTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCTTGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTATATTGAGCG # Right flank : CTGTTAATCGGTGGGCAACTCGACCAATCAACTAGTTGTAACTTTTATTAACTCCCAGACAACCAAATATCCTTACACACATAATAGACAATTTGTACAGTGCGTAATAAACCTTTCAAGGTGGATAGAAACAGAAACATTATCTCAGCTAAAAAGCTGTATTTCCTCTTTGTGTCCTGGTGTCTTGGTGTTTCAAATATTCTTTTTTCACCACCCTTCGGGTTCGCCACCTTGCCATCGTGACGGGAACCGCCAAGACGGCAAGTGGACTCACCAAGACACTAAGACACCAAGAAAAGAAATTTTCATTTTCCAAATTTACCCTTATTTCAAATACTGTTGCGCCCATAATGCTGCTTGAGTACGGTTTTGTACACCAAGCTGACAAAGAATTTGAGTGATGTAGTTTTTTACCGTACCTTCAGTCAGATAAAGAGTTTGAGCTATTTCTCGATTATTTTTTCCTTGACCCAATAGGGTTAAAACTTCTAGTTCGCGAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTTTATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 6 4571535-4570917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4571534 36 100.0 36 .................................... GCGCGGCCGGCTCGACACAGCTCGGCGATTCGAGGA 4571462 36 100.0 34 .................................... TTTTTGATGCGTTGTCCTGATATATTCATCAGGA 4571392 36 100.0 41 .................................... ATTAAAGTAACGATTTGTCCAACAGAATATTTTGGAGCAGA 4571315 36 100.0 40 .................................... GGTTGATTTTCTCCATACGAGCTAACCTCAACCCGACACC 4571239 36 100.0 37 .................................... TCGCGGGTGCGAGACAGTCTTTCTAAAAGCTTAGAAG 4571166 36 100.0 36 .................................... TTGGGTCGAATTCCCAGCTTGAAGCCGAGCTGTCGC 4571094 36 100.0 34 .................................... GGTCCCATATGTTGACGAAACCAATTTCTATTAG 4571024 36 100.0 35 .................................... GTTAACCGCGGTCTGTTATGCGCGGTCACGATGCA 4570953 36 77.8 0 ......G...G....A........A.......TGCG | A [4570919] ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 97.5 37 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : TCTTGTGGGTGTTTGACAAAGAATCGGTTGTGGCATCATATTAATAAGACCTTACTGAATATAGTTGGGTGGGAGAGGCGTTGTCTACTTGGTCGTGGGAACGCCTCTCTTATTTGTATATTAATACGAATTATTCTTATTTGCAATACCTTTTTAGATATTAGTTAATAATATTGTGTATTGACACTAGCGTTGTGTATACTGAATGTGTCGCGGGAGCAGAGACGCGAAATCACCTTGTGGGATCTTGCTACGCATTTCTACTTGACAAATAAAAGCAGCAAATCATACCCTAATTGAAGTGTGTTGAGTTTCATCGACACCAGTCACCCGAACCTTGAAAACCGCATAAATTCGTTGAGTGGTGTCGATGCTTTATGCAGCAACGTTTACAGGCTGCAAAATCGATGATTTTTTGAGGATTTTTTGTTCAAATCTAGAGTGGTGTCGATCAGGGGGTCTAGAACCCTCTCTGTGTAAGCGTTCTAGATGTGAACTCT # Right flank : ATTATCAGTTGCTCATGTCGTAGATTACCTTCACCCCCTCACGGGGATTAAAATTCTTCATCTACCTGGCTTTTTAAAAGTTTATTCAACCAAGAACCGCGATAAATTTAATCATTGATTTGCGATCGCGTAGCGCCTACTTTGCAGAATCGCTTTGACGTTTGTGACGAATGTCGTTTCATTCATAAAGAACGTCGCGACGTTAGTCGCAAATGTCGTGATGTTCTTTATGAATGGCGCGACGTTACCCACAAACGTCGCGACGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCACGACGTTACCCACAAACGTCACGATGTTACCCACAAACGTCGCCATGTTACCCACAAACGTCGCCATGTTTTTTATGAACAAGACGATGTTAAGAGATCATTTATAAAGTAAATCTTAAGTAGGGGAGGCAAAAAGCGGCGTGGATGGGGAGCATCCCAATTTTTTCAAAATACCGCAAAGCAAAGGGTTTAAACCCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 7 4608902-4607990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 4608901 36 100.0 37 .................................... CAAAGTTCTCGGGCGAAGTCCAAGTGGTTCCAGTAAA 4608828 36 100.0 33 .................................... TGGAGGAGTTGCCCACATTGGAAACTCCGGTGG 4608759 36 100.0 37 .................................... TTTATCTTCTGTGAGACCTAGGAGATCTATCATGGCC 4608686 36 100.0 39 .................................... AGTAATAAGTGTTAAAGAAGCGCTTAATAAAAAAAACTC 4608611 36 100.0 36 .................................... CTGAAAAATCAAACAATTCATCAAGCACTTTAAGAA 4608539 36 100.0 36 .................................... CTGCGCGTTACTCATGGCGTTGGGATCGTTTGGGGC 4608467 36 100.0 36 .................................... TAAAATCATTTGTCCGCCCGCCTTAAAAGCGAACAA 4608395 36 100.0 36 .................................... AAAATGAGAGGGGCAGAAGAAGGGAAATTCTGCAAA 4608323 36 100.0 38 .................................... GTTATCAGATGAATGGCTGTTATGCCATTAACCTCGGA 4608249 36 100.0 36 .................................... TCTCCGGTAACGCCCGTCATCGCTGCGGCGCTACTC 4608177 36 100.0 40 .................................... GCGCCGGCTTCCTGAATTTTTTTGACCGGAATCAAAATTC 4608101 36 97.2 40 ...............................G.... ATTTGAGTCACCAGCCACGCCAAACGACGAGCGTCTCGAA 4608025 36 97.2 0 ............A....................... | ========== ====== ====== ====== ==================================== ======================================== ================== 13 36 99.6 37 CTTTACAATCACGTCGCCCCGAAAGGGGATGTAAAC # Left flank : CGATGTCAGCTCAAATCAGCTTTATGATTGAGCAACTGAAGGAATCTGAGGATAAATAAGTTTTCAGAACTTCCTGAGATTGCAATTTTTGTTGGAAATCAAAGTAAGTCGGCACAAATGTAGAGACGTGCCATGGCACGTCTGGTACTCGTTGGGGTCGTCATTTGTCATTGGTCATTGGTCATTTGTCATTGGTCATTAGTAAGAATTTTAGGCTTGTTTACTTTCCGTAACATGGTTAGGTTTATTCCCGCCTACTTACTTAAGTTGACAAAAAGAGTGAGCGATCGTACTCTGATTTAAGTGTCTCGAACCTCATCGACACACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTGAGGTGTGTCGATACCTTGTGCAGCAAGGTTTCCAGGCTGCAAAATCGGCGACTTTCTGAAAGTTTTTTTCCGTTTTTCAGAGGTGTGTCGATTAGGGGGTCTCGAATCCTATCTGTGTAAGCTTTCTAGATGTGAACT # Right flank : TGGAATGACCAGCCGCAAACCCAGTGATATCAAGTTCAGATAATTAGTTATACTTCCCACAGTTATTGCAACCCCACCCCTTAATCCCCTCCCCGCTTGCGGCTACGGTGTACACACAAGTCTTATAAAGTTGCCTAGTGGCGTTTTGCTCCCCCCTAACCCCCCTTGAAAAGGGGGGAACTAGAATCAAAGTCCCCCTTTTTTCTAGCGTAGCGGCGCGCCAGCGCGGGGATTTAGGGGGATCAGAGGATTTGTGTGTACACCGCAGGCTTGCGGGGAGGGGCTGTTTTGGCGTTAGACAAAACCGGGGTGGGGTTCTTTGAGAATTATGTCGTAGACTACCTTTACCCCTGACGGGGATTAAAACTCTTTATCTACGCCGCTTTTTAAAAGTTCACTCAACCAAGAACTGCGATTAAATTAAATGTTATTTGCGATCGCGTAGCGTCTACTTTGCACCATCGCTTTGACGTTTGTGACGAATGTCGTTTCATTCATAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACGTCGCCCCGAAAGGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 8 4654741-4653830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4654740 37 100.0 33 ..................................... TGCCGCGTTTTTTCTTGCGGGATTCCCGGGATT 4654670 37 100.0 35 ..................................... TTATCGCTCGGATCTTTGGAATAAACCGATGGTCT 4654598 37 100.0 39 ..................................... TGCTGTGCGGGAAATGATTAATAGTGCGATCGCACCTTT 4654522 37 100.0 37 ..................................... GTCGCCTCCCATACAGCGCGGATTGAGGTAGGCTCGA 4654448 37 100.0 36 ..................................... GTCTGTATAAACACAACTATCAATTAATTCTTTTGC 4654375 37 100.0 37 ..................................... AGACAAAAAGTTGCTTATATTGGCGGTAGTGGAGGTT 4654301 37 100.0 34 ..................................... AACTTGTGTGGAAGCTAAGTACTTAGAAGTATTT 4654230 37 100.0 38 ..................................... TCAGCTACATGTCCTTACTGTGAAGGGGAAGCAAAAAA 4654155 37 100.0 36 ..................................... ACTTTGCAATGCTTGCTGTTAAACAAGGGCAGCAAG 4654082 37 100.0 36 ..................................... CTACTGCTTTTTAGCCACTGGTCTGCAATTCTTTGC 4654009 37 100.0 35 ..................................... CATCCTAGATAAAACTTCTGGGCTTAAAACTAGTC 4653937 37 100.0 34 ..................................... CTCATGAACGGACAAGAGATTCGAGGTTATGGTT 4653866 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 100.0 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : ACGATAGTCTCTATCGCTTCTGGGGTGAAAATTTACTCGATTTCACCAATTTTCAAGAATTTATTCCCGAAGTCGGAACCTATGAAGGTCGGCAACTCGGAGGTAGTATGGTTCCTGGGATGTTGGTGGAAGACTTTACGTATACTTTGTAAATAGAGCATCGCGTAACAGAAGAAGAACAGCAAATTGAAATTTTCAAGCAAAATTATCCATCAAAATTACAACAAAAGCTAAGGTTGTTGAAGAGTGATGGTGCAAACCTGTAGGTGTTTGACACGGAAACTCAAATTTTATGCCTGAAAGACTTACCTGTTCTGGGTTTGAGCCATTCACATCGATAATGAGGTTTGCACCATGTCTAAAACTCTTACCAGTAAAGCATTTGAGCCGATTTTTTTTGAACCACTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGTACCTTGAAAACCATATACAGCAAAGCTTCTATATTGAGCG # Right flank : TATGATTTCGTCTCTTTGTTTTTTGTGATAGAGACAAAATTGATCGTGCGATCGCCCATTTGTGTATCCATATCTAAAAATTGCTTGTGGAACTGTATCGCCTGTTAATATTCCTGTTATTTGATCTTACCTAATACTAATTCAATTAATGATTGCAACACATCCTTGGTTCAAGACGCGATGAATCGCGTCTCTACAATATGGTTTATTCGTCACATTCTTTTTTCAAATTGGTATAACCTATTGACCTGCATTGTGAATGTATTGACCTGCATTGCGAATGTATCGACCTGCATTGCGAATGTATCGACCTGCATTGCGAATGTATCGACCTGCATTGCGAATGTATCGGCTTGCATTGCAATGTATCGACCTGCATTGCGAATGTATCGACCTGCATTGCGAATGCATCGGCTTGCATTGTGAATGCAGCCGTCTGTACAGTTTATTTAAGAACATCTTTATATTGACAGACCCAGATCCCCAACAACTTTTGCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 9 4774756-4775307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH992898.1 Fischerella sp. PCC 9339 PCC9339DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4774756 36 100.0 41 .................................... TTTGCTCGCGCTGTCGGGTCGTCTCGGAGGTGGCTTCCGGA 4774833 36 100.0 40 .................................... GCTTCTAACTCGTCCTGTGTGAAGTGGTCTTCACTCCCTG 4774909 36 100.0 39 .................................... CTTTTTCTGCTTTCGCAGGTAATATAGCAGAAAAAACAA 4774984 36 100.0 37 .................................... ATCGTAATCCACACGGAAATACCCGATATCGCGGCTA 4775057 36 100.0 33 .................................... AATTCTTCTTTGCAAATTATCCCAATCGATGCA 4775126 36 100.0 36 .................................... TTTGTGCTGACTCATCAGGCGTAATAGCGCGATCTG 4775198 36 100.0 35 .................................... TAGAGATTGTGAGCGAATCGGTGGACGACCCCACC 4775269 36 86.1 0 ......G...G....A........A.......C... | AG,T [4775299,4775302] ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 98.3 37 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : CCTCTTGTGGGTGTTTGACAAAGAATCGGTTGTGGCATCATATTAATAAGACCTTACTGAATATAGTTGGGTGGGAGAGGCGTTGTCTACTTGGTCGTGGGAACGCCTCTCTTATTTGTATATTAATACGAATAATTCTTATTTGCAATACCTTTTTAGATATTAGTTAATAATATTATATATTTATCATAGCGTTGTGTATACTGAATGTGTCGCGGGAGCAGAGACGCGAAATCACCTTGTGGGATCTTGCTACGCATTTCTACTTGACAAATAAAAGCAGCAAGTCATACTCTAATTGAAGTGTGTTGAGTTTCATCGACACCAGTCGCCCGAACCTTGAAAACCGCATAACTTCGTTGAGTGGTGTCGATGCTTTATGCAGCAACGTTTCCAGGCTGCAAAATTGATGATTTTTTGAGGATTTTTTGTTCAAATCTAGAGTGGTGTCGATTAGGGGGTCTAGAACCCTCTCTGTGTAAGCGTTCTAGATGTGAACT # Right flank : CTATCAGTTGCTCATGTCGTAGATTACCTTCACCCCCTCACGGGGATTAAAATTCTTCATCTACGTGGCTTTTTAAAAGTTTACTCAACCAAGAACCGCGATAACTTTAATCATTTATTTGCGATCGCGTAGCGTCTACTTTGCACCATCGCTTTGACGTTTGTGACGAATGTCGTCTCATTCATAAAGAACGTCGCGACGTTAGCCACAAATGTCGTGATGTTCTTTATGAACGGCGCGACGTTACCCACAAACGTCGCGACGTTACCCACAAACGTCACGACGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCACGACGTTACCCACAAATGTCGCGATGTTACCCACAAACGTCGCGATGTTCTTTAGACCTCTGGTGAAAAAGAATGTAGAGACGTGAAATTTCACGTCTCTACAAGGATTTGGGGGAACTTCAGCATAGTGCGATCGCTCCCAATACGGTTCGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //