Array 1 28501-29681 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIP02000025.1 Klebsiella pneumoniae subsp. pneumoniae strain CRK0335 CRK0335_NODE_37.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28501 29 100.0 32 ............................. TCACTTTGCGCGCAGCTGGGACATGTAAGTTA 28562 29 100.0 32 ............................. CTGACCTACTGACGGAAATCCCGCCTGCTTGA 28623 29 100.0 32 ............................. TGAGGAGCTCGTTGACCTGCAGGCACATCCCT 28684 29 100.0 32 ............................. TAATTCAGGAAATGAATTCTAAAATCGACTCT 28745 28 89.7 32 .....-......CA............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 28805 29 93.1 32 ............CT............... CGAATCCTCAGCGCGTGTCACGGTGACTGACC 28866 28 89.7 30 .............A..T....-....... TTACTTTAAGTAGTGCATTTTTTTGTGTTT 28924 29 93.1 32 ............CT............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 28985 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 29045 29 89.7 32 ............CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 29106 29 96.6 32 .............C............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 29167 29 100.0 32 ............................. AATCGACATCTCGTCCGTGGATGCGAAAAACA 29228 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 29289 29 93.1 32 ............CA............... GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 29350 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 29411 29 96.6 32 .......A..................... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29472 29 93.1 32 ............CT............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 29533 28 96.6 32 .....-....................... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29593 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 29654 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.0 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //