Array 1 27091-30619 **** Predicted by CRISPRDetect 2.4 *** >NC_003413.1 Pyrococcus furiosus DSM 3638, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 27091 30 100.0 48 .............................. TTATATGATTCATTTCTTGTCTTAAGCAATCTGATCTGACCAGAGCTG 27169 30 100.0 36 .............................. TAAAGTTTATAAACTTTTCGTGTATAGAAAAGTGCA 27235 30 100.0 38 .............................. CCGGTTCTGCACCCGAAACTTTCATACCAAAATACTCC 27303 30 100.0 36 .............................. GGTCATACTTTACTGCTACAACCCGCTCTGGGTCGA 27369 30 100.0 40 .............................. CTCTTATGCTGAATTTTTCTGAATCTTCGGATACTGGCAA 27439 30 100.0 37 .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 27506 30 100.0 38 .............................. GGAAATGTGCGTAAAGGTTTTCTTCCCAGGCTTTCGCT 27574 30 100.0 36 .............................. GTAGTGAGGCGTTGAACTTGACCCACCACCAGCCCT 27640 30 100.0 39 .............................. CACTACTGTCCTCTCGACAATTGACGTTATTACAGTCGA 27709 30 100.0 38 .............................. TCAAAACTTTACAAAAGTAAAGAAAAAATTGAACGGGT 27777 30 100.0 37 .............................. GCGTGCCGTGTGTTTTTATAACTGCTCTAATGTGTCT 27844 30 100.0 37 .............................. TTGCTGCATATCCAGTGTGGTTGGTCTTGAGGTATAT 27911 30 100.0 37 .............................. AGACATTAGGAGACAGTATAGGCCAGAACTTGCCCAG 27978 30 100.0 36 .............................. TTAGCAAATTGCCGATTACTGCACATAAAAAAAATA 28044 30 100.0 37 .............................. TTTTTTTGCCCGTTTTTTCTTTTCCCTCACCGCTTTT 28111 30 100.0 38 .............................. AGAATCTATAAGGGATTGAAAGGTCAAGGGTATACTAT 28179 30 100.0 37 .............................. ACGAACCTCTTTGATCGTAAAAATTTCAATCATCTCT 28246 30 100.0 39 .............................. CTCCTATGCGGTCATTAGACCCCCGCCGGGGGCCGGCAG 28315 30 100.0 38 .............................. TGAGTTGTTTAGTCTAACTCTTACACCATCAGAAATAA 28383 30 100.0 38 .............................. ACAAATTAGTCAGAACCCCCCGCAATGAAAAATTTTTG 28451 30 100.0 35 .............................. GACAGCGTGGACACGGTGAACGGGCTCTGGAAGGA 28516 30 100.0 37 .............................. TGCGCTATTCTCGGGTCAAGCCTCCCAGCCTGAACCT 28583 30 100.0 36 .............................. AGCGGTCTGAGCCTGAGCCGTCGCTCCCTCAAGCGA 28649 30 100.0 38 .............................. TTATTCCTGATAGAACCTTTGCCACTGTTGAATTCCAG 28717 30 100.0 37 .............................. CTGTATTTCTTGCGGTAATACCCCCCAAATAGTTCCT 28784 30 100.0 36 .............................. CATACTTGCGGATACGGATCCAGTCAAAACTTGACT 28850 30 100.0 37 .............................. AACACTTTCCTTAACTCTGGGTCGTCTATGTTTTTGA 28917 30 96.7 38 ...................C.......... CTGGAGCGTTGGGCACAAGCATGGGGATGATTGTGGAG 28985 30 100.0 37 .............................. AGGGTTGGGTTCTCAATGGTGTATGGAGCGTTTCTTA 29052 30 100.0 38 .............................. CTATTAAACGCAATCCGCTCAGCCAAACATCACCCCTC 29120 30 100.0 37 .............................. TGATGGAGTAGATGAAATTCCTGGGGTGTCTTGGGAA 29187 30 100.0 37 .............................. GGTCTCATCTCGTGCAGCCTTTCTTCCCTCAACCCAC 29254 30 100.0 38 .............................. GGAGCTAGAATTGATGAAGGAGGTTGCTCAAGTAGTGC 29322 30 100.0 37 .............................. CACAAAGTTCTTCCATTCTACTAGTCCAGCTCTCTGT 29389 30 100.0 37 .............................. CTGTCTCCCTAAGAGCATACAATCCTCTGTACTCTAT 29456 30 100.0 38 .............................. GGAGTAGAAATGCCCAAATTCCCCTTAGGGACAAGATG 29524 30 100.0 40 .............................. CACCACCACGATGAAGGTACCGTTCTCAACGTCTACTTCA 29594 30 100.0 37 .............................. AATCAACCCCAAACCTTGCAAGGGTTGCCTCAACTGG 29661 30 100.0 38 .............................. AACTTCCTCTCCAACTCCCTCACCTCCTCATCCGACAA 29729 30 100.0 49 .............................. ACTGGATTGAGAGCAACTTGTCGAATTATGTCGTCAAGCTCGTCATTGA 29808 30 100.0 42 .............................. GATAATGCTAGGTTATTATATAGGTATAAGGCAAGGTGTCCA 29880 30 100.0 42 .............................. GTTTCCAAGCCATTCCAACCACCCCACATGTGTTGTTTTCAT 29952 30 100.0 40 .............................. TTTGTGATAGTGTTCTTTGCAACGAAGAGCTTGCTGGTCA 30022 30 100.0 37 .............................. GAACATTGTCCCCTCCTCCAAACAGTTTTTCATGTCT 30089 30 100.0 37 .............................. TAGAGTGCGGCGATTATTTTGGTTCTCAGCGTTGCTC 30156 30 100.0 37 .............................. TCAGCAGTTACGTCGTTCTTCCAGGTGAGAATACCAT 30223 30 100.0 49 .............................. AATAATCAGCAAAATCACGGGACATAGAAGGCTAGACTACATCCTACAC 30302 30 100.0 39 .............................. AGAGAATCTGGTAAGGAGACAGTAAACTGATCATGCAAT 30371 30 100.0 43 .............................. GAGTTTCCAAGATGAGTGCCCCGAGCCGGGGGCTCGGGGCATG 30444 30 100.0 46 .............................. AGAGGCCCCCACATCTGATTTAATCTGAGATGGAACTTCCACAATT A [30455] 30521 30 100.0 38 .............................. ACGGTTGGCCTTGATACACTGGCCAAAAGAAATCTACG 30589 30 90.0 0 .............A......A........A | C [30601] ========== ====== ====== ====== ============================== ================================================= ================== 52 30 99.7 39 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : TTCCAGGGAATATTTAAGGATAGTTATATTGAAGATTTTTCGGTACACGATGTTTGGGCTTATTTTTTGATTCTTGGTTTTCTTTGAGCTTTATTCTTGAAATAAAGGTTTTTAAGGGGTTAGGATTTAATTTAGTAACTTGAAGTTATTATTTGCAGCATGTTACAGTTTTGCTACTTATTTGTTACGAAAGTTTTTCGAAATTTTTTGAATAGCATGCTAAATATAGATTTTTGTAAGAAGTTTGAGAGATTCTGTTGGATTATTATAATTAGGTAGGAGTTTGCTTGGTTGAGTTAGTTAGGTATTCCTCTGGGATAGGGTGTGAAAAGGGTTGATTTTTCCCAGGGTTACCCTGGGAGTATTTTTGATTTAGGGTCTCAGGGGGCGTTGGTTTGTTTATAAATGGGGGGTTGCTGGGTAAGTTGGATGCCCCGTAAAGGTTATAAATTCGAGTGATATAGTTACTCCGTAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : AAGCACATTTATTTTTCAAAGGTGGAAGAGACACATGCTCGGATATTTGAATGTGAGGTCTGATAAGATATGTGTTCGATGTTTTTAACACGAGTTTTTAAATTAATGAAAATACGAGATATTTTTCTATTCTTTGTTTAAAATTGTTTCTAATAAAAATTTTTAAACTAGAAATTAGAAAAATTCTAAAGATCTAAAGAATCACGGCAATCATCATGGAATTAACGTTCGTTCTCGTGGGCCCAGTTATAACAAGAGCCTTCGCCCTCTTCAGCGCCTCATAGGCGTTGTGTCTCTTTAAGTATTCCTCAACGTCAATGTTCTCTTTTTTAAGAACCTCCAATGTGTAGCTATCTACCAATCCTCCAGCAGCATCTGTGGGCCCGTCAGTTCCGTCGGTATCTATGACCAGCACGGCAACTCCTCTAAGCCCTGCTATCTTCCTCGCTATACTTAGGGCAAGCTCCTGGTTAGGCCCACCAAGCCCAGCTTCCCCCTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 260714-262115 **** Predicted by CRISPRDetect 2.4 *** >NC_003413.1 Pyrococcus furiosus DSM 3638, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 260714 30 100.0 39 .............................. TGTTCATCGCACTTCTTCTTCTGACTCTGCTCCACTTAG 260783 30 100.0 37 .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 260850 30 100.0 37 .............................. TTTCAATAAGGAGTTTCAAATGGCTCGATGGAATTAT 260917 30 100.0 42 .............................. AGAACCTCCGCAATCTCCTTTGGAGAAAGGCCCTTCTTGAGA 260989 30 100.0 38 .............................. CTTCTTCGAAGTCGTAGTTTAGTGTGTCAAGATATTCT 261057 30 100.0 37 .............................. TTCTAGAAGTTCTCTTGCGAGAGCCAAGAGCGCGGCT 261124 30 100.0 37 .............................. GTGTACTTAAGAATTTCTTTCATAACTTTTCTGAAGA 261191 30 100.0 38 .............................. ACATAAGAGACGGAGAGCTTGTTATCTGGAAAGCAAAT 261259 30 100.0 43 .............................. AGTTATAACAAACCAGCATGACCCGCTCTCGGCTGAGTGGCAG 261332 30 100.0 37 .............................. CTACCATGGCCATCACCAATAATTAATTGTAAGTTAG 261399 30 100.0 36 .............................. ATTTGCTGACAAGCCATCGCAAAATTCTTCTGTTTT 261465 30 100.0 37 .............................. AACTCCACGACAGCATAAGGGACATTTACCATCGTAT 261532 30 100.0 38 .............................. TTTTTGTGCTGAGCCAACCCACCACTTTGGTAAAACTA 261600 30 100.0 49 .............................. GGGGCTGCGGGCCGGCTCACACCCCGAGCTCCCGGCTCGGGGTGCTCAT 261679 30 100.0 37 .............................. TCCAACATGGTTAACTTCCATCCTCTTAAAAGGAACT 261746 30 100.0 37 .............................. GTAAGGTATTCTTCATAGACACCGCTCTGCATAACGT 261813 30 100.0 37 .............................. TTGAGGCTGGAGAGGGCTTCTTTGTTACTACTTGCGT 261880 30 100.0 37 .............................. TTAACTCGTTTAGTTTTATGTTCATGTTCCACACTAA 261947 30 100.0 39 .............................. CTAATTTACGCTTTAGCTCGTGATCAACCCTAATCCCTA 262016 30 100.0 38 .............................. ACACTCATGTTTTGCTCGTATATGGGACTGACGGTGAA 262084 30 93.3 0 ...............A.............T | T,T [262103,262111] ========== ====== ====== ====== ============================== ================================================= ================== 21 30 99.7 39 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : TTTATGTGGAAGATATGAAGCATTAGAAACGAAGATTTTTCGGTACACGGTGGTTGGGCTTATTTTTGAATTTTTAGTCTTCTTTGAGCTTTATTTTTGAAATAAAGGTTTTTGAGCGATTAGGGTTTAATTTAGTAACTCAAAGTTAGTATTTTCAGTATGTTACAGTTTTGTTGCCAAATTATGACGAAAGTTTTTCGAAAACTATCAAATAATATTTTAAGAGGAGATTTTTGGAAAGAGTTTGATAGTTTCTGTTGGATTCTTTCAAAAGATTGCGAACTAGCTTGGTTAGAATAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGGTGCTCGTGGGAGTTTTCTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATAAGGGGTTCTTGGGTAAGGTTGATGTCCCGTAAGGCTTATAAATTCGAGTGATATAGTTACTCTGTAGGAGTATTGGGGCAAAAAAGCCCCCT # Right flank : TAATCTGCGGTGGTGGTGTGTAGGGACAAAAAGACAGAAACTCCTGAATAGGGGTGGGAAAAGGGCATGAATACCTATCTATATGTCAGGAATGACAAGTTCTTCCTCCGTTAGCAAGAATTTCCTATAAGCCTTGAGTATATCTCTATATCTTCCCTCTACATTTCTAATTTTCTAAGAATAAGGTTTGAAAAAAGCTCAAAAAGCGTAACCTTCACTTCTTCCACTCTGTATATCCACACTTCCCACAGGCCCACCTATCCCCGTGATCTGCCATGAATACTCCTGGGCCACAGCGCGGGCAGAACTTGTTCTTTCTTATAACTTTCCCATCCTTAATCTCGTAGAGCTTCCACTTCTGTCCCATTCTCACTCACCCTCCTTCTTCTCTATTAATCCATCTCTAATTAAAATGTACTCGGGCTCTATGTAGAGCATTCTCTCCTTGCTGTCGTATGCCTTCGCATATCCCTTGCTTATGTAGCTTCCGAAGTAACTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 312405-313931 **** Predicted by CRISPRDetect 2.4 *** >NC_003413.1 Pyrococcus furiosus DSM 3638, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 312405 30 100.0 37 .............................. GAATGTTGCTCAATGCAAAGGGCTCACCGCTGCTGGT 312472 30 100.0 35 .............................. TTGAGTTGAAGCGCCACTCTTTGAAGCCTATCAGA 312537 30 100.0 37 .............................. GCTTCAGGTCTTCAATATTCAATCCCGGTCCCTTTCA 312604 30 100.0 37 .............................. TCGGGTCCCTTGGAGTTCCGAACGGGCTCCCGAGGCT 312671 30 100.0 38 .............................. TTGATTCCCTTATAGATGTTCGTTTTCCACACAACTAA 312739 30 100.0 39 .............................. CTGTATATCCTTTCGTTTGTCTTCCACACTTTCAACTCT 312808 30 100.0 38 .............................. TATGTTCGTTCTCGTTCACTGTTATTCTCTTTTGTTCA 312876 30 100.0 37 .............................. AAAAACTAAAAAAAGAAGAGGTGGTGGTGAAGAATGT 312943 30 100.0 38 .............................. CTTTTCCTGCTCCTGCTTAACAAAAGAATTGTTGGCTT 313011 30 100.0 36 .............................. GGAACCACAGACCCAATCGCAGTAATTTGGGTTGAC 313077 30 100.0 37 .............................. TCATGTATTTTTCTTCTCCCAAATCCAGGGGCTCCCA 313144 30 100.0 37 .............................. TCTCAATTGGGGAGTTGCTTTAATGGCTTTTGGAGTG 313211 30 100.0 39 .............................. AAGATAATCGCTCAACAGTTTCAATGCTATACTTGTCAA 313280 30 100.0 38 .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGTTT 313348 30 100.0 47 .............................. GATTTCAGAGAACAACGGTGAATTTAAGAATTTCCTGACTTTCAATT 313425 30 100.0 39 .............................. TTGCTGATTACGAAGGCATATCCTTCAATTGTTGCTCGT 313494 30 100.0 39 .............................. ATAGACTTCCCTTGTGTACTTTAGTAGTTCTGCAAGTAA 313563 30 100.0 43 .............................. GAAGGATAGCAGGATCTAATGTAATTCTCGCGACATCTTTAAA 313636 30 100.0 39 .............................. GATGAGGAGTGAAAGTTCTTGCAAAGCCCTTTCCAAAAG 313705 30 100.0 36 .............................. AGTATCGCTACTGTTTTCATGCACCACTGCACCCAT 313771 30 96.7 36 ..............G............... AATCAATCCGAGAATCGAATTTTCCTATACGCTTTT 313837 30 100.0 35 .............................. TTTGTTTTTGCTCCTGTGTCTTGTGGTGATAAAAT 313902 30 96.7 0 ...A.......................... | ========== ====== ====== ====== ============================== =============================================== ================== 23 30 99.7 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : TATTTTATCCGCAAGTTATAAAAGTTTGCGCAAAAATTTTCGGTACACGGTTTTTGGGTTTCTTTTTGGATTTTTAGGTTTCTAAGGGCGTAATTTTTGAATTGGGGGTTTTTGGGGAGTTAGGGTTTAATTTAGTAACTTAAAGTTATTATTTGCTTTGTGTTACAATCTTATTGTTAAATTGTAACGAAAGTTTTTCGATGAGTTTTTAAAAAGATTTTGAAGTGTTGTTTTTTGAATTGGCTTGAGGTTTTTTGTTGGATTCTTGTAAAAAGGCAGGAATTAGCTCAATTCAATCATTGAAGCTTGTTCGTTGAATAGGGTTTGGTAAGGGGTATTTATAATCAGCTAGTTTTTTGGTTTGTTTTTGGTTTAAAGGGTTATAATGGTTTGTTTTGTTTATAAATGGGGGGTTGTGGGGGAAGGTGGATGTCCCGTAAGGCTTATAAATTCGAGTGATGTAATTACCCCAATGGGGAATTGGGGCAAAAAAGCCCCCT # Right flank : GCAAAAGAATTGAAAGAAAGTAGCATCGGTAAAAGAGACATTGTAATTATATATATGCTCCTAATACCGCTCCTTCTACTTTTTTGGAACTTTTGCAAGTATTAAGAACATTAGATAATAGAGGAGAGGTAGACTCTATAGAAGAATGTCATCTTCACACTATTCCTGCTCTCCACTCTTCTTCTAGGTTTGTTTGTAGGAAATATAAATTTGTGATCACTGCTGACCACAACTCTAAAAACTATTGAAACCCTAGATTTTACCATGCCTAATGATCTTAAGAAAGAGCTCAGAGAACTTAAGGAAACTCTTGAATACCTGAAGAAGAGTTTTGAGGTAATTTCACAGTTGGCTCAAGCTTACATAAGGCTTCTAAACGTTTACGCCGAATATGGGGATTTGGGAATAGATGTTGTTATTCCTGAGATAAAGCATGACCCTATTGCTAGAGATATAGTGAAGATACTTTTTGACCTTAGGCGCGCTAACGTTAGTCAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 625177-623119 **** Predicted by CRISPRDetect 2.4 *** >NC_003413.1 Pyrococcus furiosus DSM 3638, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 625176 30 100.0 39 .............................. GACCATACTCACCAGCAGCGGTGAGCCCTTTGCATTGAG 625107 30 100.0 37 .............................. AAGGGGAATGGTTCACGTAGTACTTGAGGGCGCTCAC 625040 30 100.0 36 .............................. AAAAGATCAAAACAATAACACAGTCCTAATGCTCGT 624974 30 100.0 37 .............................. ACCACTCCTGAAAACGCTAGCAGGACTAGTGCTTGTG 624907 30 100.0 37 .............................. GGAACTCCTCGATTTTAGTACCTGTGTCAGAGTCATA 624840 30 100.0 38 .............................. AGGCACTTGGCTTGGAGGGATGACGTCCACTATTTTCA 624772 30 100.0 37 .............................. TCTCAGCATACTCCTCATCCGTCAGCATATCATAGCG 624705 30 100.0 37 .............................. TAAGCATCATAATGCAAGACATCTGTATATATAATAG 624638 30 100.0 38 .............................. TCTCTACCCTTACAAGCTTCTCGAATCTATCGAATTCG 624570 30 100.0 38 .............................. CCTTCTCAGAGGGTGATTTATCTACATACCTATTATAT 624502 30 100.0 37 .............................. CCACATAAGACATTGTCATACAAAGTAGGACAAAATA 624435 30 100.0 38 .............................. GTCACGTAATTCGCCAAGTCCTCTTGGAGACCGTTCCT 624367 30 100.0 36 .............................. GTGGATAATATAATCCCTGTTTTTCCCAAGAATTAA 624301 30 100.0 40 .............................. AGATTTGGGTCTAAGGGATATACAAAAGATGCAAAGAAAG 624231 30 100.0 38 .............................. AGTGCCCTATCAAGAAACATTGCCACATGCCATGAATA 624163 30 100.0 38 .............................. GTGTATACGGTATGCAACACATCAATAACTAGCTTGGC 624095 30 100.0 38 .............................. GTGTATACGGTATGCAACACATCAATAACTAGCTTGGC 624027 30 100.0 38 .............................. TTCACTAGCTTTTCACACACTCTCATGGACATTAGCTA 623959 30 100.0 36 .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGT 623893 30 100.0 38 .............................. CTGATAGTAAACTACGCTGATTTTGTAATACAAAAGTC 623825 30 100.0 37 .............................. CCTTATACTTCCCTGCCTCAACGAATACATTAACAAC 623758 30 100.0 42 .............................. TATCTTGAATCTCTCATTTACTTCAGCAATCGGTAACTCCGA 623686 30 100.0 38 .............................. GCAATGAAAAATTTTTGCAATGTCGAAATCAATGCCCA 623618 30 100.0 37 .............................. TGGAACTCTATCAAGGTTTGCAACACCTTGCTCCCGC 623551 30 100.0 35 .............................. ACCTAGCCTTCACATCCCTCGACACCTTCTCAGCT 623486 30 100.0 35 .............................. AACGAACCACTCAATAGTGTCGCCATAATCACCAT 623421 30 100.0 39 .............................. TGAGTCCCCTATAAACCTGTGGTCTTGGTCTCCTTACAA 623352 30 100.0 38 .............................. GCCGACAACATCAGCAACGGTGAGCTTATTGTAAGGAG 623284 30 100.0 38 .............................. AGTATTCCACCGAGAATTGTGCCTTTGTACTGGACTGC 623216 30 100.0 38 .............................. AGTCCTAAGTCTCCAGCAAACCACCCGTCTAACCACCT 623148 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 31 30 100.0 38 GTTACAATAAGACCAAAATAGAATTGAAAG # Left flank : AATTATCTTGGTTGAATTTTATATCTTTTCTGAAGATTTTTCGGTACAGGGTGGTTGGGCTTATTTTTCCATTTTTAGTTTTCTCTAGGCTTTATTTTTGAAATGGAGATTTTTTAGGGATTAGGGTTTGATTTAGTAACTCAAAGTTAGTATTTACAGTATGTTACAGTTTTATTACTTATTTGTTACGAAAGTTTTTCGAAAATTTTTGAATACCATGATAAAGACAAATTTTTAGAAAAAGTTTGATAGTTTCTGTTGGATTCTTTCAAAAGATTGCGAACTAGCTTGGTTAGAATAGTTAAGTCTTCTCCTTGGATAGGGTGTGAAAGCAGTGTTTATTCCCAGGATGCTCGTGGGAGTGTTTTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATGGGGGGTTGCTGGGTAAGTTGGATGCCCCGTAAGGGTTATAAATTCAAGTGATATAATTACTCCATAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : AAAGCTTTCAATAAGCCTTACACTAAAATTACTTAAGCACTTAAGCAGGTATTTAGCTCTAAAAACCCCTCAAAAGCTTTAAAAAAAGTTTATAGAAAATAAATAATAAAGCAACACTAATTATTCGGCCCTATATATCTCCTCAGAGAATGTAACGAATTCTGTCCAGGATAGATGTGCCAAGAACTTAGCCTTTGGATTTGGCTTTCCGTTCTTGAATGCCTCTTCATTGTAGGAGTATCCAACCACTTCTCCCACAAACCAGATGTGATCCCCGTAATCTCTTTCATCTATAACCTTACATTCTATGTTGGCCAATGCCTCCTTTATGCTTGGAACGCTCACGTTCTTTGAGGGAATCAGGGTTATGTTCATCTCCTTTAGCTTTGCAGGTCCCTTCTTTGTCCCAGCAATCCAGACATCTCTAAGCATGTCAAGGCTTGGAACGCTGATTACAAACTCCTTATACTTCTTTATTAGTCCATGAGTTGTTCTTTGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACCAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 695937-698992 **** Predicted by CRISPRDetect 2.4 *** >NC_003413.1 Pyrococcus furiosus DSM 3638, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 695937 30 100.0 37 .............................. AGTGAAGAATTTGACGTACAAATGTCCTTAGTGGAAC 696004 30 100.0 37 .............................. TGATGTAGATCTCTGTACCTTTCGGGACCTGTAGGTC 696071 30 100.0 39 .............................. CAGTTCTACTTTGATAAGACTGTGGTGGTTAATGGTAAA 696140 30 100.0 37 .............................. CTCTTATGGTGAAGCTTTCGACATTTTCTTTGGATGT 696207 30 100.0 37 .............................. CGTCTTCTCTGAGATTCTTGGCTCGTTCTAGAGCCAT 696274 30 100.0 37 .............................. GAGAGTATCAGGAGCTTTCTGACCTCCTTATACAGCT 696341 30 100.0 38 .............................. GACAAAGAACTCCCTAGCGTCCCTCCCCGTGTACTTGA 696409 30 100.0 37 .............................. CCACACTTCTATCTCAGCACCCCCAAACGTGAAACTG 696476 30 100.0 36 .............................. TTCTGCCGTCCCTTTTCTCGACGAACCTCATACCGA 696542 30 100.0 39 .............................. TTGAGGAGATGCTTACTGCGGTTAAAAAGGACATTGCAG 696611 30 100.0 37 .............................. GGTGCTTGAGCTCGCTAGTGCCCTCCTCCTGGGCTAT 696678 30 100.0 38 .............................. TAATGCTGTACAGGATTGACAAGGAGGCTTACGCTTCT 696746 30 100.0 37 .............................. TACTATAGGCGGAACTCCCTGCAATGAAAAATTTTTG 696813 30 100.0 37 .............................. GCACCTTCTTCACCATCGCCGTCTGGATTGCTGGTAG 696880 30 100.0 37 .............................. TGTTTTCGAATATTGTTACTTCTTGTGTATCTCTGAA 696947 30 100.0 37 .............................. ATTCACTGGGTTCTTCAGAAAGTTCATAAATTCACCG 697014 30 100.0 34 .............................. CCTTCTTCTTTTTAAATTTTTTAATTTTCATTAA 697078 30 100.0 41 .............................. TGATCTAGGCGTCGGGTAATTCTGTAAGGTCTCTGGCTCAT 697149 30 100.0 43 .............................. ATGACTATCAGGATGATAATCGTTTTTTTATGCTCGCTTACAA 697222 30 100.0 37 .............................. ACAGGCAATTAGAAACTCTTTCAAAAACGCAGTTCAG 697289 30 100.0 37 .............................. TAGTGTAACAACATCATATGGAAAGTCTCCCACGTTG 697356 30 100.0 38 .............................. GGGTTTACTCCGAACGGTGTTCTGCTAACTGATATAGT 697424 30 100.0 36 .............................. ACTTAGCCACCTCCGAGATGTTTTCGTAATAGTTAT 697490 30 100.0 37 .............................. TTGTAGGCTCGTGGACTTGGCTTCCACACAACTAATT 697557 30 100.0 37 .............................. CTTCTTCTCTTACAAAGTCTTCAATGATAGTAAATAT 697624 30 100.0 38 .............................. TGGGGTCTCGTCGCAATCGGTGCAGTATTCCTAAGCCT 697692 30 100.0 36 .............................. GCAATTGGGCTTTTTGTAGCTGGAATCTTGGGTGAT 697758 30 100.0 36 .............................. AAAGATTCTGATTCCCGAAAGGCTTTTTCCGACACC 697824 30 100.0 37 .............................. TCACCATTACCTCCTAATCCAATCATCTAACATTGAA 697891 30 100.0 38 .............................. TAACTCTAATGTTTCATCGACTAACATGTCAATTTCAT 697959 30 100.0 38 .............................. TTGGATTTGCTACTCTCACGTATAGGGTCCCTACCTCT 698027 30 100.0 35 .............................. TGATATAGTCGTCTGCTCCTGATACCCAATATATG 698092 30 100.0 37 .............................. AGGAGGCTCTAGATGAGCTAATCAGCGCAGAAGGTGG 698159 30 100.0 35 .............................. ACCACCCCTGGGAAAGGCCTTATGGTACTACCTAA 698224 30 100.0 35 .............................. CTTAAAAATACTACCCTCAACAATCAATATTGCAA 698289 30 100.0 36 .............................. AACCTCCCTAAGCCTGTCCTTCCAAGTGAACTTATA 698355 30 100.0 37 .............................. CTCTCTTACTTCTATAAGACTGAAACTTCACACCTAA 698422 30 100.0 38 .............................. TAACGCTTATTTCACCCTGCTTAACACTCTTAACCCCA 698490 30 100.0 37 .............................. ACATCCCTACATAATAATACGCCACTTGTCCAAAAAC 698557 30 100.0 36 .............................. ATCTCCATCATACCAATGCTGTGCAAAATCAATCTT 698623 30 100.0 40 .............................. TTGAAAAGGTTGGGTGATAGGGTTAAGGAGGAGTTAGTGA 698693 30 100.0 39 .............................. TAAACTTAAGCTGGGATGGGCTATATACAAAGACAGACA 698762 30 100.0 38 .............................. GAGATAGAGCTGGTTTTACGTTATGGCAAAATCTTAGA 698830 30 100.0 36 .............................. TGGTTCATACAATTCTGGAAGGTTGTAGAAACCAAC 698896 30 96.7 37 ...C.......................... GATGCCCAAACCTGAATATACCCCGCACTAACTAAGT 698963 30 90.0 0 ...C...........C..A........... | ========== ====== ====== ====== ============================== =========================================== ================== 46 30 99.7 37 GTTACAATAAGACTAAAATAGAATTGAAAG # Left flank : TTGCAAGATGGTATGGAGCACCTTATGAGTGAAGATTTTTCGGCACACGGTATTTGGGCTTATTTTTGAATTTTTAGTCTTCTTTGAGCTTTATTTTTGAAATAAAGGTTTTTGGGCGATTAGGGTTTAATTTAGTAACTCAAAGTTAGTATTTTCCTTGTGTTATAGTTTTACTATTTACTTGTGACGAAAGTTTTTCGAAAATTTTTGAATACCATGATAAAGACAAATTTTTGGAAAAAGTTTGAGGGATCCTGTTGGATTCTTGTGAAGAGTTAAGAATTCGCCCAGTTAGTCTAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGTAGTGTTTTATTCCCAGGGTGCTTGTGGGAGTATTCTTGGTTTAAAGTCTTAAGGGGAGTTGGTTTGTTTATAAATAAGGGGTTCTGGGGTAAGTTGGATGCCCCGTAAGGGTTATAAATTCAAGTGATATAATTACTCCATAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : GTTCTTGGTCCAGATGGTATTGCAGATAAGGACGGAGATGGAATTATTGCAGGTGATCCGGACGATGACGCTGCAGAAGTCATAAGTATGTCCCTAGGAGGATCTGCAGATGATACTTACCTTCACGAGATCATTAAGAAGGCCTACGAAGCGGGAATAGTTATAGTTGCAGCGGCTGGCAATGAAGGAGCCTCTAGCCCAAGTTATCCAGCAGCCTATCCTGAAGTAATTGCAGTAGGGGCTACTGATATAAATGACCAAGTCCCGTACTGGAGCAATCGTCAGCCAGAAGTTAGCGCTCCAGGTGTTGATATACTTAGCACTTATCCAGACGACACTTATGAAACTCTTTCAGGTACAAGTATGGCAACTCCTCACGTAAGTGGTGTTGTTGCGCTAATTCAAGCTGCATACTATCTCAAGTACGGCAAAGTACTTCCAGTTGGAACATTTGACGATATGAGTACCAATACAGTTAGAGGAATTCTGCACTTGGCAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1065544-1064076 **** Predicted by CRISPRDetect 2.4 *** >NC_003413.1 Pyrococcus furiosus DSM 3638, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================== ================== 1065543 30 100.0 37 .............................. TTGTAGTATGCGGTCCTTGCGGCTGAGAGCACTTCAG 1065476 30 100.0 37 .............................. TCGTTATCTCTTACGAAGTCTTCGATTAGTGAAAACA 1065409 30 100.0 37 .............................. AGGAGGTGGGACAATGACAGACATTGAAAAAATATTG 1065342 30 100.0 37 .............................. TATCTATTGTACAGGTACTTGTTACACGTGAGTGCAA 1065275 30 100.0 34 .............................. TAAGTTCTTTTACAGAAGCCTTAACCTTTTGATA 1065211 30 100.0 39 .............................. TTGGCCAAAAAGTGAAAGGCGCATTGGAGTGGGTGGCCA 1065142 30 100.0 37 .............................. TTAACCTCCTTGGCTGGTTTAGAGGGAGCCTTCCTCG 1065075 30 100.0 37 .............................. TTTGCTGGCTTCATCTGTCTGGAGGAACTTAATTGGC 1065008 30 100.0 40 .............................. AGGGTACAGAAGTTTACGTGAAGGCAGAGAATGCTGGAAG 1064938 30 100.0 37 .............................. GAAGAAGGGCTACAAAGTTCTAAGGGACTACGGGGAC 1064871 30 100.0 38 .............................. TCAAGAGTTCTATCCTGCTTCACAACACCCATATAAGG 1064803 30 100.0 37 .............................. ACGATGGGAAGTACTACTACGAGGGGAGGGTTGTAGC 1064736 30 100.0 45 .............................. GGACTTTAGATATGTTGTTGTTATTGTATAAGTCTCTAAAGTCAG 1064661 30 100.0 37 .............................. TTATCTAAGCTCTGCTTAAATGGGAAAATCTTATAAG 1064594 30 100.0 59 .............................. CTTTTTGCGGGCGATGACGGGGGGTGGGCTCTACTATGCCGTTGGCAAACAACTTCCTG 1064505 30 100.0 38 .............................. ACATAAGACGTGTGGCCGTCGAAGTACCTTATTCTCCT 1064437 30 100.0 37 .............................. GCTGTCATCTACCCGGATCTCAGCGAGGTAGGCCGTG 1064370 30 100.0 35 .............................. TTCCTTATCATTTCTACTGCAACTCTATCTCCAAA 1064305 30 100.0 37 .............................. TGTGAAACGCTAATAGCTGTTATTCTAACCTCTCTTC 1064238 30 100.0 37 .............................. TAGAATTATAGATGAAGAAGTAGTAGTGAAGTCAACT 1064171 30 100.0 36 .............................. GAGTTGTGTCAAGAGGATGATTAGGTAGAGCCTCCG 1064105 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================================== ================== 22 30 100.0 39 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : AGACAACTACAATGTACATGTGAAACACCCAAAAATTTTTCGATACACGCTAATTTAACTTTTTTCCCAAAAATATCTATGAAAAAGTTAGAAAATTGAAAATAAAGGTTTTTGAGGGATTAGGGTTTGATTTAGTAACTCAAAGTTAGTATTTTCCTTGTGTTATAGTTTTACTATTTACTTGTTACGAAAGTTTTTCGAAAACTATCGAATAATATTTTAAGAGGAGATTTTTGGAAAGAGTTTGAGGGATTCTGTTGAATTCTTGTGAAGAGCTAAGAATTCGCCCAGTTAATCTAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGGTGCTCGTGGGAGTTTTCTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATGGGGGGTTCTGGGGTAAGGTTGATGCCCCGTAAGGCTTATAAATTCGAGTGATGTAGTTACTCCGTAGGAGGATTGGGGCAAAAAAGCCCCCT # Right flank : TTTGGACTTCATTCACAAAACGTCTCGATTATTCTCTGAATTATCTTACTTGTCTTTGCCCTATCGGACTTATACAAGTAGGGCAACCTGATAACCTCCGCATTTATTCCCTCTTTTCTGAGCCTCTTCTTTAACTCCTCGCAACTAAAATCTTGATCTGGTCCCAAGGCTATTACGTCCGGCTTCAGCCTTTTTATCAAATCTATACTTATTTCACCCGGTTCTCCAATCACAACATCATCCACATACCTAATACTCTTGAGCAGTTCTGCCCTGTCTTCAGCTGGATTAATAGGAGGTCTTCCTTTTCTCCTCTTCACGGTTTCATCATGGGCAACAATAACTATTAACTCATCACCCAACTCCTTAGCCATCTTCAAAAAGTGGACATGGCCGACGTGGAGGATGTCGAAAACACCTCCCACCACAACCCTTACCTTGCGGTTATCTCCCATATCTTATCCCTCGCGTGGTGGATGACTTTCACTGCCTTTCCCCTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 1091858-1091088 **** Predicted by CRISPRDetect 2.4 *** >NC_003413.1 Pyrococcus furiosus DSM 3638, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1091857 30 100.0 37 .............................. TGCCGAAGCAAATAGCTGCTCCACACACAGTCTTTGA 1091790 30 100.0 37 .............................. GGAAGAAATGCAGACGACGTGATAAACTACGTGAAAA 1091723 30 100.0 38 .............................. CGGTGGAACTCGTGCACTAAGGCACCATACGCCCAAAC 1091655 30 100.0 37 .............................. TGAGCTTCAACCTTCCATTGAACTCTATGAGCTTCCG 1091588 30 100.0 38 .............................. GGACCTCTTTCATAATCCTCAGGGCGTCCTCGTAGCCC 1091520 30 96.7 36 .............................C TTGCCCAACCTCTCTAGAAACGCCCACCTTTGTTAC 1091454 30 96.7 37 .............................C GCAAATCTCTTTTTAAATCTTTGAGAACGTCTTCGGG 1091387 30 93.3 37 ...A.........................T AAAGATACAAGAAACGCCTTCTCCGTCTCAACCTTAA 1091320 30 93.3 36 ...A.........................C GAGAATACTGCACCCACTCGTCGTGAACTCTACTGG 1091254 30 93.3 40 ...A.........................G GGGACTATGCTGGGAGAATCTGCAGGGTTTTTAACCGTAG 1091184 30 90.0 37 ...T........................AG AACATAGGGAAGGGATTTTATTACATTGAGCTTTCAA 1091117 30 90.0 0 .......C.......A...........G.. | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 96.1 37 GTTCCAATAAGACTACAAAAGAATTGAAGA # Left flank : TGAAAAGGCTAGGTTAGAGTGAAGTTTTTGAAATTTTTTCGGTACACGTTGATCGGGTTTCTTTTTTGGTTTTTTAGTTTTCTAAGGGCGTAATTTTTGAATTGGAGGTTTTGGAGAAGCTAGGGTTTAATTTAGTCACTTGAAGTTATTATTTGCTTTGTGTTACACTTTCATTGTTAAATTGTAACGAAATTTTTTCGATGAGTTTTTATTAAAGTGTTAGAGGATTGTTTTTTGAATTTGCTTGAGGTTTTTTGTTGGATTCTTGTAAAAAGGCAGGAATTAGCTCAATTCAATCATTGAAGCTTGTTCGTTGAATAGGGTTTGGTAAGGGGTATTTGTAATCGGCTAGTTTTTTGGTTTGTTTTTGGTTTAAAGGGTTGTAATGGTTTGTTTTGTTTATAAATGGGGGGTTGTGGGGGAAGGTGGATGTCCCGTAAGGCTTATAAATTCGAGTGATATAATTACCCCAATGGGGAATTAGGGCAAAAAAGCCCACT # Right flank : CTTATTTCATTAAACCTTGGCCCTTAAATGTTTTACTTTGAAACTTCAATTTTTTGGAAAGTTTCTTGTAAGAACGTGTAGATAAGGTTTATAATTTCCCCTACCTTTGGGTTAGCTTGAGAGGTGAGGCATATGAAGAAAATAAGACAACCCATCATTGCAGTTCTAGGTCACGTTGACCACGGAAAATGTCTTCTTCCAGAAGAAAAAGTTGTTTTACCAGAGATTGGACTTGTTACACTGAGAGAACTCTTCGAGCTGGCAAATGAAGTTGTGGTGAAGGATGAGGAGAAGGAAGTTAGAAAGCTGGGGAAGATGTTAACAGGTGTAGATGAAAGAGGAAATGTCAAGCTTCTCAATGCCCTCTACGTGTGGAGAGTTGCACACAAAGGTGAGATGATTAGGGTTAAGGTCAATGGATGGTATTCAGTTACCGTAACTCCTGAGCATCCATTCTTAACTAATAGGGGGTGGGTAAAAGCTGGTGAGCTCAAGGAAGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAGA # Alternate repeat : GTTACAATAAGACTACAAAAGAATTGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //