Array 1 150980-150614 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNME01000008.1 Hungatella hathewayi strain 123Y-2 ctg_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 150979 33 100.0 35 ................................. GTTCCAACGAACGATATTTAGAAGCGGTTCCAATG 150911 33 100.0 33 ................................. AAAATAGAGGTTGAGATATATGCCTTATTCCCG 150845 33 100.0 34 ................................. ATGAATCCTTCCGGACAAATTCTGTCGCCATTGT 150778 33 97.0 34 .................C............... ATGAAACTCCTTTTTCCAGTCAGCGCCGCAAGGA 150711 33 81.8 26 .................C...T..A....GG.A AAGATACTTTCCTTTGCACCCCCTCT GATA [150682] Deletion [150653] 150648 33 81.8 0 .....C...........CA.....T.A...T.. | T,C [150616,150620] ========== ====== ====== ====== ================================= =================================== ================== 6 33 93.4 33 GTCTCTGCTAGCGATAGTGGAGTGGATTGAAAT # Left flank : GTCTTTATTGATTGAAGAAATAAACAAAAAGATTTCAACAAAAGAAAAATTTATTACGTAAGCAGATCCCGAAGATTTGGGAAAACTATGGCGTTGGAAATGCTGGCTTCTTATTATATAAAAGAGGGGGACTGCGGACTCTTTATTCAATAATCTTAATTAAAGAATTTCACACAAATATAGAACATTTAAATTGCCATAATGTAATCTATATTAATTTTACTGATTAGTTTGAGGTTATATTATCTGGTCAACAAACATGATACGAAGGTGGAACATTTTGGTGCCTATGAAGGGTAAATGTAGAAAAACCTCTCATTTTCTAGCCTGTGAATTATGGTGCGAACCAGAAGTGATCATAAAACCCCTGGGAGGTTCGCACCGAGAATTTCGCGGTTATGGAGGGAAGATAGGAGAATTGGATGAATTGAGTTAATGAAATATATGCAAAATACCCATGATTATTACTGGTTATATGGTATAATATGTGTGAATTTGCA # Right flank : TACAAAAATAAACCGTTGAGGGAGTCTCTGCCAGCATTAGAAGCTTATATTAAATTTATGAAAAAATAATTCACAGACGTTAAAAATAAAAAGACAGAGGAGACAAGGATTGAAATACATTTTTATACATGGACTTGGACAGGGGCCGGATAGTTGGAATAAAACGGTTTCCTGCATGAGAGAACAGGAAGAGATTCAATGCCTGAACGTATTTGCTTTAAACGATGGGGAAGAGATTTCGTATAGCAGAGTATATGAGGATTTTTCGGCGTACTGTGAGTCTGTAAAAACGGAGTTTGGGCTTTGTGGTCTTTCTTTGGGCGCTGTGATTGCATTAAATTATGTGGTGGAGCATCCGGGAAAGGTAACGTCGCTGGTTTTGATTGGGGGACAGTACGTGATGCCGAAGGGGCTTTTAAGACTGCAGAATATGATATTTCGGGTGATGCCGAATGGGATTTTTAAGAAAATGGGGTTAGGTAAGAGAGAACTGATTCAGT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.67, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTGCTAGCGATAGTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 325514-325748 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNME01000004.1 Hungatella hathewayi strain 123Y-2 ctg_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 325514 34 100.0 33 .................................. CATTATGATAATATCCTTTAACGCTGGCGCGAA 325581 34 100.0 33 .................................. TGCAAACTCATAAGAAGTTCAGGAGGCGGATGA 325648 34 100.0 33 .................................. TTAGGTATCTGCATTGAATGTCGTACCTGGAAG 325715 34 88.2 0 C.................T.....T........C | ========== ====== ====== ====== ================================== ================================= ================== 4 34 97.0 33 TGAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Left flank : AGTATTTTACAGTGTCTTTTTATGACAAGGAGTACAAAAAAGCACTGAACATCTGCGGAACACGGTCCGGGCGTGACTGCGATAAGGCGGCGGAAGCTGGGCTGACCCCTTATTTTATTGATGGTACTACGGCCTTTGAAGAAGCAAATATGATTTTTGTCTGCCGGAAGCTATACTGTGATCCAATGCCCGGTGATAATTTCCTGGATAAGGAAAATGATGGGAAATGGTATCCGGATAAAGATTATCATACAATGTACATTTCGGAGATTGTGAAAGTGCTTGTGAAAGACTGAGAAGAAAATTAGCTGTGAGGAGTGGCTGCACGGGGCGGTAGCTGGTGCGAACCTTAAGTGAACATAGAATTACTGGGAGGTTCGCACTGGAAATTGGGGGGGAATTGGGGGAATATGGAGTTGATGATTGATTTTTAAAGGGATTGTTGTACAATATAGTTAAGGCTGTGAGGGGAGTTGGGGAGGGAGATTGGGAAAAATTGC # Right flank : CCATATGGAAAATCATACTAATGTCAACCAATCTGTAAAAAAATGTCCCACAAACACTGTGATTTCCACAAAAAAGAACCTTCAGATCACCATATCCGAAGGTCCTTTTTTTATCCAATTTCCTTTTTCTACCTAATCACCAAGATAATAAAATGCTGTAAAATACCCTTTCTCATTATAGTAAAGATCATTACCGTATACGGTATATTCAGCCGAAGCCTCCTCTTTGCCTTCTTCAACCGGTTCTCCGGCATATAGTTCCTTTTGAGTTTTTGATGCTTCCGCAAGGTTGGTATAGGTGCCTGTGACGGCGCCTTTGAGGATATAAATATTGCCCTCATAGACCGTTTTCATAATCGTATCGTCACTGTCCTCCCACAGGGTATACGTTCCGTTCTCTAAATCCGCGGTGATCGCCGCCTCATTGCCGTAAGTGGAGGGATCCATACCTTTGTCATACGTCAAATAGCCGTTTGAACCGCTGGGCCCGGCGTTGGGAT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 423282-424461 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNME01000004.1 Hungatella hathewayi strain 123Y-2 ctg_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 423282 33 100.0 35 ................................. GTATCAGGCGGAGTCGCAACTGGCCCCGCCTTTTC 423350 33 100.0 35 ................................. AATGCGTCAAAAATAAAGACAATGAGCGCTTGGGG 423418 33 100.0 34 ................................. CTTAAGTCAATAGGTTTCTGGTAATTCTGTGGTT 423485 33 100.0 34 ................................. AGATGCTTATATTAAAAACAAGCCGACTTCCATG 423552 33 100.0 34 ................................. AAAATCTATTAATGATCTGCCATCTAAATACACT 423619 33 100.0 35 ................................. ACCATCACCCACACGACCGCCACTCCAATCAGCAC 423687 33 100.0 33 ................................. CCACTTGTTGGAGGAAAAGATCACAAGCGGCAC 423753 33 100.0 35 ................................. AGTTGCATAGTACTTCTTTCCAATTAAGCTGTTCA 423821 33 100.0 34 ................................. AACATCATAAAGTATGGAACTGTAGATTATCTTC 423888 33 100.0 34 ................................. GTTGAGTTGGAATTCCGCAGCGGCGTATTCCGCT 423955 33 100.0 34 ................................. AACATAACGCTCTCTCCTAAATTAACTGCAAGTT 424022 33 100.0 35 ................................. TAAAGTCAAGTCGCAACGGCCACATCAATGAGAAT 424090 33 100.0 35 ................................. TCCTATGAACGCTTGTAAATATAATATGACTTATT 424158 33 100.0 35 ................................. TATAGCTGAGTTGGATCACACGTTGCAGAAAATAA 424226 33 100.0 35 ................................. TCTTTCTCTGGCGCACGGATCGAAACAGCAATTAT 424294 33 100.0 35 ................................. GACAGAGCATTATAAGTGGGTGCTGAATATTGAGA 424362 33 100.0 34 ................................. ACCGACAAAAGCGTGACAGCCTATAACGCCTATC 424429 33 97.0 0 ..............................T.. | ========== ====== ====== ====== ================================= =================================== ================== 18 33 99.8 35 GTCGCCTTCCGCTAGGAAGGTGGGGATTGAAAT # Left flank : TTACTTTTTCAATGATACCGACACGCTCTGCACTTTCCGTCCAGTATTGCTTACTTTCTGCATGGACGGGTGTAGTCGGTAAAGCAGTAACGACAGTTGCAAGAGCTAAGAAGCCCGTACACAATCGTTTCCATGTCTTTTTCATAAATCTAATGCTCCTTTCATTTTAGGTAATAAAATAGCCGTCCAATAAGAACGGCTGGAAATAGAAAAGGAACGTCATTTTAGGCGTTCCATAGTCTATGAAATATTCAATTTTTTGTTGTTTCAATACGGATGTGCTGTACCATATCTTTGCATATCTAAGAAAACTTGCGTATCAAGGCTCATTCTTTAGTAGTAAATAAGTAGTAAATTGATGTGTTTGTTTTCTTGAAAATGCTGATAGATACTGTGTTTTAGCGGATAATCAGATTTTTATTGTGTTTTTATGCATAAAAAGTTGTATAATATGTCTAGAATATATCTGATTATTAATGAGAAAAATGGATATATTTGCG # Right flank : TATTGTATATTCGATAAGGATAGTATCAGCTGTGGCATTACATTTAGTAATGTGCATGCGATGTCTTGTTTTGCGTTGCAATGCAGGAGATTAAGAACCACGTCAGGTTTTTATAGTGATATGCCAAACACAGGAAAATCAGCGTTTATAAAGGAAACTATGCCATCATTCTTACTAATACCGTTAAAGGCTTTTTATGAATACGGGATGCAGTATTAATTCCAACAACGTCGAGAGGTAATTAATATGTTCTTTTATGGATTATCGCCACCTATGTATAAAAATGAAGAAGGGTAAGCAAGGCTTATCCTGATCAATACGCCACCTGAAAACTTCCATTATTAGTATTACATAACAGAAATATCCTGCTGTTGGCGTATACCTGGAAACCGTATTTGCATAATAAGTTGCGGTACTATAGCTGCAGTTTTTATGAACAACATTATAACACCTGGAACCATGATTACAAAGTAACTAATTGATTAACAGGCTGAGAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGCTAGGAAGGTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 430839-434233 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNME01000004.1 Hungatella hathewayi strain 123Y-2 ctg_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 430839 33 100.0 33 ................................. GCTTCTGCCTCTGTCAGATAAAATTCGTCGTCC 430905 33 100.0 35 ................................. GTCCCAGATTCCGGCCCAACTCATGGGCCTAACAT 430973 33 100.0 34 ................................. GCCACTTTTTCCTTACCAAGATAACCGACGGCCT 431040 33 100.0 35 ................................. GTTCTGCCTGCGGTATTTCCGACTCTGCTGAAGCT 431108 33 100.0 34 ................................. ATTCCATCTGCCGTCGAATTTCTTCCCAGCCTAA 431175 33 100.0 35 ................................. AAGTGAGTGCAAAGAAATAAATCAGGAAATACATA 431243 33 100.0 35 ................................. AAATTTCCTGTTATGCCACGCGGTTATTTCGTCAA 431311 33 100.0 35 ................................. GTTTCAAAAACTGGAGCAGAAGGAACGGTGACACC 431379 33 100.0 35 ................................. GGCAATGGTTGTCAAGACTTACCTGGAAGACCTTA 431447 33 100.0 36 ................................. TTTCATAACCTTGTCATTATCCCATCCCCCTCGCTC 431516 33 100.0 33 ................................. AAGTCCTGATAAAGCAAAATTAATTGCTGATTA 431582 33 100.0 34 ................................. GCCATAATATCATTCCTTTCGTGTTGTAGTTGTG 431649 33 100.0 32 ................................. TTAAAAGAATAATTAAGGCGGCCCACTACGGA 431714 33 100.0 34 ................................. AACGATTACTGCAGGCGGCACACCCCCCACGGTT 431781 33 100.0 34 ................................. GTGCTTATGTTTCCATTGCTATCCAGGTATTCTT 431848 33 100.0 34 ................................. ATTTTCTGGAATAGGAAGTCTACTAGCAAAAGCA 431915 33 100.0 35 ................................. GAAACTTATTCGTATGATTTAGTTAGATGTTTTTC 431983 33 100.0 34 ................................. AATTCGGGGATTGTTGCAAAGAACATCGGCGATG 432050 33 100.0 35 ................................. ATCTGTCCTTGAGAAAGTTCTCTCATGTGGCTCTT 432118 33 100.0 34 ................................. AAGTCGATCACAGAGCCCGGGGCCAGTTCGATTG 432185 33 100.0 35 ................................. AAATCATCATTCATCTGGAAATTAGCCTGCAGAGC 432253 33 100.0 34 ................................. CGCTGAAAAACCAGCAGGCCACAGGTGCAACGGT 432320 33 100.0 35 ................................. GACCGAGAGTCCTGCTGCCGGCACATCCCCATCAG 432388 33 100.0 33 ................................. GCACCTGCTGCCATGAACATCTCAGTTTTGTAG 432454 33 100.0 35 ................................. GCTATTGCCATACTCCAATATCTCGGCCATTTCAT 432522 33 100.0 36 ................................. GTCTGTAATATCAGCTCCTGCACCTGCCCCCTGTAA 432591 33 100.0 36 ................................. ACAAAAAAGCAGAACCAGTGATCCCAATCGACATTG 432660 33 100.0 33 ................................. TGTATATTCACCGGCTGACTCAAAATTGTTATA 432726 33 100.0 35 ................................. TGATCTATAGAAATCACTTAATGTCCGATACACAT 432794 33 100.0 34 ................................. GCATAATGTCGAGAAGGCAGTGGCATAGATGATT 432861 33 100.0 33 ................................. TTCTGTATCTCTTTCAGCTTTTCAATCAACGAT 432927 33 100.0 34 ................................. ATACCCAAAAAGTTGTGATATCACAACTACAACA 432994 33 100.0 33 ................................. GTGTCATCGTCAAAGTACCGTTTCATGCCGAAT 433060 33 100.0 33 ................................. GTGTGATATACCAACCCATGATAAAACTGTTCC 433126 33 100.0 34 ................................. TCAATCATCATAGTGAGGACATGATTCATATGAT 433193 33 100.0 36 ................................. TGACTCTTTCTTTTCTGGCTCTTCTATACCTGTCAT 433262 33 100.0 33 ................................. TAACCTCCGGAAAGCTTAATTCTCATGAGTATA 433328 33 100.0 33 ................................. GCCCTTTTCGGTGTCGAGGCCACCAGACAGGTT 433394 33 100.0 34 ................................. AACAGGTATATTGCCTTCCCGCTTAAACTCTACA 433461 33 100.0 34 ................................. ATCTTCACAGTCTCATTGCAGGCCGGACACTCAA 433528 33 100.0 33 ................................. CCAGCATCTACTGGATTAGGTGTAAGCGTTACG 433594 33 100.0 34 ................................. GTACTGGTCTGCAGACATGTCAGCTATGGCCTTA 433661 33 100.0 35 ................................. CGTAATATAATCCCAGGCTAATCATTGCCATCTCC 433729 33 100.0 36 ................................. ATTAATGTTCTGGGTGAGGCAGTGGCCGGAGCTCTG 433798 33 100.0 34 ................................. AGTTATAAATATTTCCCATTAGAAAGATTCAAGC 433865 33 100.0 36 ................................. AGGACAAAGTCACAGGCACGCGAGGGTGGCGGAAAG 433934 33 100.0 33 ................................. CCAAATTCCGAGATGAATGCCTCCCGGCTTCCA 434000 33 100.0 35 ................................. GGATCCTTAACGAACGTCTTAGCCTGCTCCCTGGT 434068 33 100.0 34 ................................. GCATTAGGATGTATCACAGAATGTCCGAGTTCAT 434135 33 100.0 33 ................................. CCGTTCTATATCAGCTTCGGTATTACTACAGCC 434201 33 93.9 0 ......................A.....A.... | ========== ====== ====== ====== ================================= ==================================== ================== 51 33 99.9 34 GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Left flank : TGCTGATTACATATGATGTAAATACAGAGACTGCCGCAGGCAGAAGCCGCTTACGCCGAGTCGCAAAGCAATGTGTTAATTATGGCCAGCGTGTTCAGAACTCGGTGTTTGAATGCAATATGGATGCGGCAAAATGCAGAGCTGTAAAGGGAATTTTAGAAGGAATTATTGATAAGAATGTGGATAGCCTCAGATTTTACTACCTTGGTGATAATTATAAGCACAAGGTGGAACATATTGGTGCCAAACCAGGATTTGATGTGACAGAACCATTAATTTTTTAGGGCAGTTGTTCTTTAAAAAAATAGTCAGACAATTCTTTTATGTAAAAGTGCGAATGTCAAGTGAACATTAAAATACCGGGAGATTCGCACCTGTATTTTAGATGTAGATAAACCGAAATATGTAATATAGTTTGACAAAATGATTGAATAAGTCAAAATAATAGAGTTTTGTTGCTGGCGAGGAGAAATTCACTTGTAATTTGACTTATATTTGCT # Right flank : TATTAACGTATTTCTCGAGGCATTTTACATCTCCTTCACTCAATATTCCCTGTTGACAACGAACCTCCTTGTCTCAGGGAATCTAATAGGTGCCTAAATGTTGAGAAAGGCGTTTAAAACAGCTGTCTGGAGCAATCGTTTACATGATACCCCACTCATTCTCAACAAGTTTTCCCTGTATAAACGGAGAGTTTCCCTGTATAGCCTGTTAAAAATCTTTCAAAAATCTATTACTCATCGGTATGCATTATTGTATTTATAATTGGCGTTATATCATTTCCTTTCTTTAAACAGCTGCAATAATACCATCTTACCATACACAGCCTGTGCCTGCTTCTGCACTGCTGCCTATCCCCTCATCAGAAAAAAACAATTATTTAACACAGAACGGCAAAGGTTCCCGAATTACTGAACCTTTGCCGTTTTAATGTCAGAAATAAACCTCATATCCTTTCAAAAAGCACCATAATATGGTAAAATATTCCGATAATCACGCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //