Array 1 65725-66424 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURU01000012.1 Escherichia coli strain GER_MD14_1507_Eco_053 EC-BIM053-53-VE-DEU-2015-033-PK_S67_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65725 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 65786 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 65847 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 65908 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 65969 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 66030 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 66091 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 66152 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 66213 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 66274 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 66335 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 66396 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92124-93860 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURU01000012.1 Escherichia coli strain GER_MD14_1507_Eco_053 EC-BIM053-53-VE-DEU-2015-033-PK_S67_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92124 29 100.0 32 ............................. TGAAATTATCATGCCAGCGCCATCTTGATGAT 92185 29 96.6 32 ............................A TCGAAAAGCTGGCGGTAAACAAAACGCGTGAA 92246 29 100.0 32 ............................. TCGCTTTTGGCTGTCTGGGCGAATTCCGGAAC 92307 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 92368 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 92429 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 92490 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 92551 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 92612 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 92673 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 92734 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 92795 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 92856 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 92917 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 92978 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 93039 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 93100 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 93161 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 93222 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 93283 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93344 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93405 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93466 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93527 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93588 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93649 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93710 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93771 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93832 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //