Array 1 68702-70320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNB010000010.1 Gordonia asplenii strain TBRC 11910 10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 68702 29 100.0 32 ............................. CGCTTGAAGTTGGCGAGGCCGTCACGGAGGGT 68763 29 100.0 32 ............................. GGCGTGATCGCGCACGGGGTAGCCGAGTGGAC 68824 28 96.6 32 ....................-........ AACGACTATCTGCCGTGGATGGGAACGAGATT 68884 29 100.0 33 ............................. GCGTTCATTCGCGTCATAGGCTGCTGAGAGTCG 68946 29 96.6 32 T............................ GACGCGTGGGGGCCACGGATCGGCTACAGCCC 69007 29 96.6 32 ..G.......................... ATGGCAGCACTGCTACTGCGGCCGTTCCGTGT 69068 29 96.6 32 ..G.......................... GCGTCGCGGGCGGCCTCACCAGCGACATAGTT 69129 29 96.6 32 ..G.......................... GACGGAAATATGGCGCGGAGATTCGCCGCCTT 69190 29 96.6 34 ..G.......................... AGCACCCGCCAAGCCGACCCCATCAACGACAGTT 69253 29 93.1 32 ..T.........................T GAGTCTGATGGCGGCATCAGCCAGCAACTAGA GA [69256] 69316 29 96.6 32 ..G.......................... TCTGTCTATATGGTCACCGTCGGCAGCAGCAG 69377 29 100.0 32 ............................. AGGAGGGTCAGCAACCCCGCAAACCCTACTTG 69438 29 93.1 32 ..G.........................G CGTTCGGTTGCGCCGTCGGCGGCGCCGTGGCA 69499 29 96.6 32 ............................G TCGATCCCGCGTGTCGGGTTCGGCAATAAGAT 69560 26 86.2 32 .......G...............---... ATGGACTGCCGCAACCAGATTGTCGAGCCGGG 69618 29 100.0 32 ............................. TGCAAGGCTTCACCCAGCAATCACTCAGGCTA 69679 29 96.6 32 ............................G AACATCTTCTGGCTGCAACAGCGCCCGGGTGA 69740 29 93.1 32 .......................A....T TACGGTGACGTCGTCTGCGTCCAAGCGCGGAT 69801 29 96.6 32 ...........C................. ACGAGGTCTTGCTCGACGAGCTTGTCAACCTC C [69806] 69863 29 100.0 32 ............................. ACGGTGGTGGGGGAACTGACCGCCGAGTGCTT 69924 29 100.0 32 ............................. GCGTTGCCGTCGATCGGCACCGCCGGCTACGT 69985 29 96.6 32 ............................T TCGTTCCGTGGTTTGAGTGGCGCTTGGGGTTC 70046 29 100.0 32 ............................. GCCCAGGGGCAGGGCGTTGCGATGGTCAACGG 70107 29 100.0 32 ............................. GCCCAGGGGCAGGGCGTTGCGATGGTCAACGG 70168 29 100.0 32 ............................. GCACAGACCGGCGCGCTGACGTCGGCCGGCGT 70229 29 100.0 33 ............................. GATCTTCCTGCTGGCAAACGCCGGTATCCAAGG 70291 29 93.1 0 ...........................GA | G [70300] ========== ====== ====== ====== ============================= ================================== ================== 27 29 97.1 32 GTCCGCCCCGCGCGAGCGGGGATGATCCC # Left flank : GCGCACGCATCACGCGACGGTACAGCGGTGCATTCGGCGCACTCAGGTACGCGAACGGCCCGTACCCGTCCATCGGCGCCGCCGCCTCTGCCGATGCCTCCACCACGTCTGACATGCGTCCATCGTGTCATTGGGGTCTGACAGGTTTTCGTCGGGCTGCTGGCAGCGGGTGGTGAGCAAGGTGGGGCCCTGGTGTGCGCGGCGGTCATATGCCGGCCCGTTTGTTGTCGCAGCAGGTCGTTGAACTCGTCAAGGATGACGGGGCGAAGGATGGTCCACAGCACGCACGGCGTGCAGCGTGTTGCGTTCCGTGTGCATCACCACGAGTGGGAGCTCGTCGACTTCGACGGCATCATGCCGATGCGGTGTCTCTTAGGCAATGCGACGACTCGGAACCGGGTTCGGGTCGGGTGGAGCGATGGGTCGAAGATGCGTCGGGCCAGGCGGCGAAAGTGAATGAAAATCCTGCTATCGTCATGCTGCGCCGCAGGTCAGCAAGT # Right flank : ATCCCTGGCAGGGAGGCTCGGATTGACCAACGCCAACGTGCGCCCCGCGCGAGCGGTTAACAGACGCTCCTCAACAAGCTGGTGTCGTCGTCATCCGAGAAGTGTCAGTCCCCTCAATCGGGGACGATCCCAGCCAGTAGTCGAGTCTAAGGTGCGTCGTCTGCCCCACACTGCCAGCGCTGATTCGGCGCGTTCACTCGCGTGTCGGGGATTGGCCTCTGAATACACAGACACCCAATTTCAGGGCGTCGAGTACATACCCGACTGCGCGGCTCTCGGCACAATCGGGAAGGTCTTGGGCTCATAGTTCGCACGAATGGTCCGTTTAGATGACATTGCGAGGTCTCGCACGCTTTTGCGTAGATTGTCCGAGAAGATCGCCAGAGACCACCCAGACAGGAGAAACACCCGAAATGACGCAACAGCCCCCGCAGCAGCCCTACCCAGGCCAACCCGGCCAGCCGTACCCTCAGCAGCCGTACCCAGCGCCTCCGAAGAAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : GTGCGCCCCGCGCGAGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71573-72090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNB010000010.1 Gordonia asplenii strain TBRC 11910 10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71573 29 93.1 32 .C.T......................... TTCGCGGTCCACACCTGCGGATCGTCACCGCC 71634 29 89.7 32 .C.T..................C...... TCGTCGATGACGAACGGGTCGCAGTCCTCTTG 71695 29 93.1 32 ...T........................T TCATCCTGGACGGTGGTGTAGTCGGCGCCGTC 71756 29 100.0 32 ............................. GAATTGTGTGTACAGGCAACGGGTTTGAGGGT 71817 29 96.6 32 ............................A TTGCTGCGGTCGTCGACGACGACCCACTCGGA 71878 29 96.6 32 .....................T....... AAGCCGGCCGGCAACCGGGCACGGCTCATCCG 71939 29 100.0 31 ............................. TGTAGCGTCAGTCTTCCTACTAATAGAGAGT 71999 29 89.7 33 .CG..............A........... AGGAGTATGGCCAGGAATCGCCAACATGAGTAG 72061 29 86.2 0 T..AA.......................A | G [72086] ========== ====== ====== ====== ============================= ================================= ================== 9 29 93.9 32 GTCCGCCCCGCGCGAGCGGGGATGATCCC # Left flank : TGAAAGTCGCATCGCTCACCGCAACGAACGACTTCGAAGCCGACGCGTCGTCAACGATCAAGTGCGAGGTTGTCGTCAACGGCAAGGTCAAGTTCACCAATACCGCGAAGGGACCTGGTGCGTCCGCGTCCTGCTCGGGATCGATCGACTGAGGCGCCAACACCCGCCATGTTCGCTCGCGGCGATCCGGCGTTGCCGGTTTGCCTCGCCGCGGTCTCGCCGTGACTTCCGAAGAGCGGGTCGAGTTGAGCCCTTGCATGCGTGTCGGACAAGTCGCGGCCAGTGCCCACGACTTGCTGTGGGTGCATTCCGAGTGCATCGTCACGAGTGGGAGCCCGTCGACTTCGACGGCATTATGCTGATGCGCCGTCCCACCGACAACGCAACGACTCGGAACCTAGTTCGCAGCAGGTAGAGCAACGGGTAAAGATGCATCGAGTCAGGCGGCGAAAGTGAATGAGAATCTTGCTATCGCCACCCTGCGGCGCAGGTCAGCAAGT # Right flank : ACGCCCTCTTGTCTTCAACGACTTCCGGGTCGTGCGCCCGCACGAACCAGTCATGGTCCTACACGTGAGTGCCGCAGCTACCAGCCGCGATGCAGCTATTCGACGTCGGGGCCTTCGGTTCACTGCTCGCATCAGCGAATACATCGGCGGTGTGCACGGAGAGCTGGCTCGGGCCGTCGAGTCGAGACGGTCCGGAGCAGCGGAAGGCGCGATCCTAGAGCCCTACGGCCATCTGGCCACAATATTGCCTCCGTGTCCCCACGTCCTCGCCCGGCGTGAGTGGCAGTGTTGCTGGACCGCCACGGCGTGATCGCACGTACGTGAGTGTCTACCCACCACTCGTCGACACTCTCACTCACTGTCCGAGGGCTCGGATAATGAGTCGGCCACCATCTGGTTCGCCCGCGGGCTGCGAGCAATCACATGGCCTGGATCCGCACCCGGTCCGCTAGCTAGGCCGGGTTCTCAAACCCCGCCGCGTGAACGGGACTGAAGCGGAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11764-15452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNB010000045.1 Gordonia asplenii strain TBRC 11910 45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 11764 29 89.7 31 .........A........A.........T GTGGGACGACATGGGGTCAGCAGTGGCCGGA T [11789] 11825 29 96.6 31 ............................G GAGCTTCCCACGGGACCGCGAAAACAAACGG T [11850] 11886 29 89.7 32 .............A...........T..G GCGCGGCCGATGCGCGCGGAATAGGCCCGATC 11947 29 86.2 31 ......T....C...A............G ACGCGGTGGAGATCATGCGCGGCGGGGCCGA T [11972] 12008 29 96.6 35 ....T........................ CCGCGTCGGCGCCCGCCGACCGCATCGCCAGTGCG T [12033] 12073 29 93.1 31 CC........................... ATTCGCCCAGTCCGTCACACTCTTCGCACAC T [12096] 12134 29 96.6 32 ............................G AACCCGAAGCTGCGCTCCAATGCACCCGCCGC 12195 29 96.6 32 ............................T AACGACCCGTTCCAAGCGTTGCGCGTGCTCAT 12256 29 100.0 32 ............................. CGGGTGCCCTGCCACGCGGATGTCTTGTTGGA 12317 29 100.0 32 ............................. TGCCCGCGTGGTAGGAGGCCGGACAGCACCGA 12378 29 96.6 32 ............................G TGCGGCCGCACGGGGCTGTGCCACTTTGCACA 12439 29 100.0 32 ............................. GAGGCTGACGATGACTTTTACGGCGACACTGA 12500 29 96.6 32 ............................G GTGTGGGACGGCGGCGACCAGAAGAGCGCAAT 12561 29 100.0 32 ............................. TCTCAAGGAATCCGGCGCGGGCGACGACCTTG 12622 29 96.6 32 ............................T GTCGAAAGCCACTGCGCGCGAGTCATGTTCGC 12683 29 96.6 32 ............................G TTTCACGATGCCCACTCCTGGCGCCCAGATCG 12744 29 100.0 32 ............................. GCGTATATCGGCGTGTTCCTGGTCGACACCAC 12805 29 100.0 32 ............................. AACTGTTCTTGCCCAACATCCGGCGAGCTCGC 12866 29 100.0 32 ............................. TACAGTTTGACTAGCCCGATTACAGAATCGCG 12927 29 100.0 32 ............................. TCGACGCGGTGCGCGCACAGTGCCAGCGGTCC 12988 29 100.0 32 ............................. CGCGAGGGTTGACGCTCAACAAGGGCACCCTG 13049 29 100.0 32 ............................. GCGAACAGTTGCGGCGTGTCGCGCACGACCTC 13110 29 100.0 32 ............................. GAGGCCACCAATAGCCTCATCGACTTGCTGGG 13171 29 96.6 32 ............................T CGTGGCGCGAGGTGCGGGTTGCCGAGGGAGTT 13232 29 96.6 32 ............................G TGCGGCTCAGCAGGCCGTTGACGCCGGGGTAG 13293 29 100.0 32 ............................. GGCCAGCGTCGAAGGCTGCTGGGCGACGATCG 13354 29 100.0 32 ............................. ACGATCAAGTCCGGCGCGATGGACTTGCTGAA 13415 29 100.0 32 ............................. ACGCTGTCCCACTCGATCTGACCGGTCAGCGT 13476 29 100.0 32 ............................. GTCGCAATGTACGAGCCGGGCCAAGACATCTC 13537 29 100.0 32 ............................. GATTCTGGGAGGGTGTGCGCGCGGCTTTGATC 13598 29 100.0 32 ............................. GCATCCATCGCCGCCTGGTGCCGTTCGACGGG 13659 29 100.0 32 ............................. GCGGGCGCCAACCGGCCGATCGACTCACCGAA 13720 29 100.0 32 ............................. AGGCCCGCAAGGACCTGCAGGACTGGTTGAAG 13781 29 96.6 32 .C........................... TGCAACTCGGCCGCGATGCCGGTGAGATCGTC 13842 29 96.6 32 ...............C............. GTCTTCGCCGCGCTCTTCTCCAGCGCATCGAA 13903 29 100.0 32 ............................. ATGCGAGACATCGACCCGCCGATTCCGCCGGC 13964 29 100.0 33 ............................. CTGCCGCCGGCCGCACTCATCCTGCTCGACGAG 14026 29 96.6 32 ............................G TTGCCGCTGTTTCGCGACCGCCCAGTTGTTGG 14087 29 96.6 32 ............................G GACCGGCCATGAGTGATCTCGTCATGCCGTGT 14148 29 100.0 31 ............................. GGCGATGTGATTGGCGTGTGGTTGCGATGGG 14208 28 93.1 32 .....-..............A........ GACAGGTAGTCTCGTTTCTTCGCCCCTTCCGC 14268 29 100.0 32 ............................. GGGCCGAAGGTATGGCCGACCTCGCCGACATG 14329 29 96.6 32 .........A................... GCCTATATCGGCGTCTATGCAGTCAATAAGAC 14390 29 96.6 32 ............................T TAAGGGCTTCTATGATCCGAAGACGGGGAAGT 14451 29 100.0 32 ............................. CTCCGGCTGGTATGCCGTCGAAGCAGAATCGG 14512 29 100.0 32 ............................. GTGATCGCATTCGCCTGGAATAACGTGATTAA 14573 29 100.0 32 ............................. GTCAAGGCCTCGACGTATCCGGGTCACCAGGA 14634 29 100.0 32 ............................. ATCCCCGCCAGCTCGCCACGGTTCGAAACCCG 14695 28 96.6 32 .....-....................... GGCGACACCTACACGCTGAGCACCGACACTGT 14755 29 100.0 32 ............................. TGTATCGTTTGAAGCAGCGTCTTGGTGTGGGT 14816 29 100.0 32 ............................. CGGATCGGCCACGATCTCGGCGTCTGACGAAG 14877 29 100.0 32 ............................. CGGAGAAGATTGCTGTAGCGAACGAGAAGGGG 14938 29 96.6 32 ............................G TCGGATCAGTTCATTAAGGCCACTTCCGCTGG 14999 29 96.6 32 ............................G TCGCATGGAGATTGATCCGAGCTGGCCGTCGA 15060 29 96.6 33 ............................T GTGACCGGTGACGCGCAGAAGAAACTCGATCTC 15122 29 93.1 30 ...................A........G TCGCCTCCTGGGTCGGTGACTCCCGAGGGC 15181 29 100.0 32 ............................. CATCCGTACAGAGTCGACAGGACGCTGCCCCA 15242 29 100.0 32 ............................. AACGGACCAGCAACAGCAGTAGACGCGGCATT 15303 29 96.6 32 .........................T... AACGTGGCGCCTATCTTGTATAGACGCCTAAT 15364 29 93.1 31 .......T....................G TTTGGTCCTCCGACCCGACGGCGCCGATGAA T [15389] 15425 28 86.2 0 .....-...................T.TG | ========== ====== ====== ====== ============================= =================================== ================== 61 29 97.6 32 GTGCGCCCCGCGCGAGCGGGGATGACCCC # Left flank : TGGGAAATCCGACGCACACCCTGTCGGACGGCAGAGGTAAACGGGTCGTCGCACATCGGACCGTGGAGCATCAACGAAACTGGTTGATCGGCAAGGGCGCGCTGGATGGTTTCGAGGTCGCTGCGTCGAGCGCCGACGGCGGGGCGCTGGCGCTCGAACTGAGCGAGCGCAGCGTCGAAACTTTTCGGCGGCAGGATAGAACTGTTCATCTGACGACTACCAGGTTCGACGGTGAGCTCTTGGTGTCCGATCCTGATGCTCTGCGCCGCGCATTGACGCACGGTGTCGGACGCGGAAAAGGCTACGGATGTGGCTTGATCACGTTGTTGCCCAAGGAATCTGCGTGAAATGAAGGAGATCCCGGGTACTCGCCCAAGCCGGCCGAGCGAGTTGATGCGAGTTCGCGGCGGGTGGAGCAACGCCTCGAAGGTGCGTCGAGCCAAACGACGAAAGTTAATGAGAGTCCTGCTACCGTCCCACTGCGGCGCAGGTCAGCAAGT # Right flank : GGCGGCCACGGTCATGGGATGACCCACCCCCGGAATACGCCCACCCCACCCAAACGTTGAAACAAACACAGAGAACCCGACATTTCCCCCGACGAAAGCAGAAATATCCCGCCCCCAGCAAGCACCAGAAACCTAACCCCAGTAGCCCACGACCTGCCTCGACACCAAATTCACAGCCTTCTGCAAGCACGCAGCTAGCACTGGTCGCCTAACCTCGATAGAAACCGATACTCGACTCACCGAACGACATCACCCCAGCGCATCGTGTCATTTGTCCAACTGTCAAAAACTGCAGCTAGCGGCCTTTTGGGGCACTCTCGTTAACAGATTCACACCAAAAAGCGACCACCTAGTTAGCGCAGCGCTACCCCGCGTGGGCTAGAGTTCGCTAGAACCAGTTCGAGTGACGCATGCCACAGCTGATCTTCACCACAGCGAATCGGCGTCGCACAGCTCGATCCGACACAACGAGGTGATGATCCGATGACGTATCAGCTCGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCGCGAGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //