Array 1 18195-16763 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRVE01000017.1 Escherichia coli strain UMB2055 NODE_17_length_91062_cov_31.678122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18194 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 18133 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 18072 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 18011 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 17950 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 17889 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 17828 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 17767 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 17706 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 17645 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 17584 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 17523 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 17462 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 17401 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 17340 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 17279 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 17218 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 17157 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 17096 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 17035 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 16974 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 16913 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 16852 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16791 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9199-10325 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRVE01000014.1 Escherichia coli strain UMB2055 NODE_14_length_137112_cov_32.364390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9199 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9260 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9321 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9382 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 9443 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9504 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 9565 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 9626 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 9687 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 9748 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 9809 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 9870 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 9931 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 9992 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 10053 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 10114 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 10175 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10236 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10297 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGACGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //