Array 1 1066672-1067188 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR536431.1 Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8 chromosome VREC0864 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1066672 29 100.0 32 ............................. AGCAGACGAGCAAGGCCGTGCTCGGTCAGACC 1066733 29 100.0 32 ............................. GGGTTGCAGCCCGGGTTCGATTATCGCGACGT 1066794 29 100.0 32 ............................. GCCGTTTTGTTAAATCCGTTAATAGTGCAGAG 1066855 29 100.0 32 ............................. CGTTGATCGTCATCAAAAATGGTACAACCTCG 1066916 29 100.0 32 ............................. GGCATTTTCACCGGTATTACACCTCTGTTTAG 1066977 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1067038 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1067099 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1067160 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTAGGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCTGCCCAGCCTTGCCAGATGTTGCCTCAGATTCAGGTTATGCCGCTCAATGCGCTGCGTATATCGCTTGCTGATAACGTGCAGTTCTCCCTTCAGGCGTGATTCATAAAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1089813-1090818 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR536431.1 Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8 chromosome VREC0864 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1089813 29 100.0 32 ............................. CCAGGGATTTATTGATAGCAGTTGGAAACGAC 1089874 29 100.0 32 ............................. CAAAATCCTGCCGGGAAAAAATCGACAACCAT 1089935 29 100.0 33 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAGC 1089997 29 100.0 32 ............................. GCCTGATAGCTTTTGTTTCATCGCATAAACCA 1090058 29 100.0 32 ............................. AACGCGGCAAAAGGCGCGAAAACGGTACAGAG 1090119 29 100.0 32 ............................. GCGGTGTTTCTGGTGCTGTAATGGCCAGGAGA 1090180 29 100.0 32 ............................. TCGTTCAACCGCTCAACGCGCACATTGGTAAT 1090241 29 100.0 32 ............................. CGTCATAAAACTCGCTCAGCGCCTTTTGACGC 1090302 29 100.0 32 ............................. ATAAAAATCCCACTCAACAGCGAACCAAACCA 1090363 29 100.0 32 ............................. GTCACCGGGTCAGATACTGATGTTATGGCCTA 1090424 29 96.6 32 .............T............... ATGGGAATATCGCTGTGTTGGCTCTTTCCGAT 1090485 29 100.0 32 ............................. GCGGCGATCGTATTTTCCGCTACGTCGCGCAA 1090546 29 100.0 32 ............................. CTGGGCGGGTTTATGAAACGCCGTTTGTTGGT 1090607 29 96.6 32 ................T............ ATTCGGCGGTGGTAAATGCCCCCTCTGGCATG 1090668 29 96.6 32 ............................T GGTGCCGCCGTCGTAAAATTTACCGCGCCCCC 1090729 29 100.0 32 ............................. ACGAGAACGGCACCAGTTATCTGATTGTAAAT 1090790 29 89.7 0 .A.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAAAGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGACGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCACCCCATCAAGATGCCTTCGCCAACTCCTGCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGTCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //