Array 1 13886-11897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJITM010000019.1 Xanthomonas hortorum pv. gardneri strain X56 Contig_20_116.384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 13885 31 100.0 35 ............................... TCAAGTACGGCCAATAGGGCGTCTGCGTCTTCCAG 13819 31 100.0 33 ............................... CAGGTCCTTGAGAGATTGTGCAAACGCTTCGTC 13755 31 100.0 35 ............................... GCCATACCGCAGCCCAGCAGGTAATGCGTCACCGG 13689 31 100.0 34 ............................... CGACGCATGGCAAGGTGCGCGAAGGCCGCATCAT 13624 31 100.0 35 ............................... GCAACGGTGGATTTGCCGCTGCCGGAGAACAAGGA 13558 31 100.0 35 ............................... TGAAGCCGTACCAGAACAGCGTCCATATGATTCAT 13492 31 100.0 35 ............................... TTGCCGGCCGCAATCATCGTCTTGGCAAACTGCCA 13426 31 100.0 33 ............................... TCTGGTAGTAGTGCATCAATATGCCCCCCCCTC 13362 31 100.0 35 ............................... ACTGCCATGAAAGCCACCGCAGCTTCATCGCGTCG 13296 31 100.0 33 ............................... TGCCAGTGTGACTCCAGGCCCTTGCCGTCCGGA 13232 31 100.0 36 ............................... GGTGATGGAGCGACGCCTAGAAATTGCCCCGCGCCG 13165 31 100.0 35 ............................... AATTCGGTGATGGTCAACAACGGCATCATGACCAG 13099 31 100.0 33 ............................... CAATACCCCGATGGGCAACACTGCGGTGTTCAC 13035 31 100.0 34 ............................... GGTACTACCCAGGCCAGCCCACCGAGTGGGAACT 12970 31 100.0 35 ............................... TTCAGCAACATCAAACAGCGTTGGAACCGTACCCA 12904 31 100.0 36 ............................... TCCGTAATCAGTCGAACGTCAATACGTGCAGTACCA 12837 31 100.0 33 ............................... AATAGAGACCACGCGGACAGTGTAGCCGGGGGA 12773 31 100.0 34 ............................... CAGATGATGAGTGGGGGTGTGCTCGACATTGCCG 12708 31 100.0 32 ............................... CACCCTCGGTTCCCTGCAGCATGATCGCCCAC 12645 31 100.0 35 ............................... CAGTAGTAGCGTCGACGATCGCCACGGTTATAGAG 12579 31 100.0 34 ............................... CCTGCAGCATGATCGCCCACCTGGTCAATTCACC 12514 31 100.0 35 ............................... TTGACCTGCACCCAATCCTCGGCCTTGAACAAGCT 12448 31 100.0 34 ............................... TTTGGCCGGCGCCGCCTTGCCGCGAACCGTGGCC 12383 31 100.0 35 ............................... ACTTCCAGCATCGGTTCAGTGAAATTGATTGGCGC 12317 31 100.0 34 ............................... ATTGGATATTCCCTGTGTTTTTTGCTGATCTTTA 12252 31 100.0 33 ............................... GCTATCTGGGCAGGTAGCCGCAACCGGTGGCTT 12188 31 100.0 33 ............................... TGGATGCAGATGCTTAAAGGCGATACCGCAGAC 12124 31 100.0 35 ............................... CGTCCAATTCGGCTAATGTTGGGCTTGGCGAGTCC 12058 31 100.0 34 ............................... ACGGCTTCAGGCCATACCAGTCAAGCAGGGCCTG 11993 31 96.8 35 .............................G. CTCGACATGCTGTCCTGGTCAAAAAGCGCCGATGA 11927 31 74.2 0 ...TA..T....TA...C...........GT | ========== ====== ====== ====== =============================== ==================================== ================== 31 31 99.1 34 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AGTGACGAGGCGAGCGCACCATGATGGTTCTGGTCAGCTACGATGTCAGCACCAGTTCCCCTGGCGGCAAGAAGCGACTACGCAAGGTCGCCAAAGCCTGCCGGGATCTCGGCAAACGGGTGCAATTCTCGGTCTTTGAAATCGAATTGGAACCTGCGCAATGGACCGCATTGCGGCAGCGCCTGTGCGACCTGATCGATCCAGCCGTCGACAGCCTGCGCTTCTATCAACTCGGCGCGAAATGGGAGGCCCGTGTGGAGCACGTCGGCGCCAAGCCGAGTCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCCGGAAAAGCCCGGCAGGTTCGCGAAACCACACAAGCTATTGATTATAATAGAAATATTTTAAAAACTGGCTAACTACAAAGGAGCCGACAGCTCAATTCGATTGCGCCCTCGAAGGGTCCGCACAGAGACGGACTTTTTTCTAACACCCATCAACACTTATGCTCAGGGCA # Right flank : GGCTGCGTGCCCTGCTGCATTTGCCGCCATGGGTTACAACATCCCGGCGGACAAGTCTTGCGTACGCTGCGACAGGGTAGCGAAACCTCTAAAAACTGAGACCTTTAGCGAACGGTAATGGTCTGCGGATTACCTGCCGGCTTGCCATCCACCATCACCTGCGCGGTGTAGGTGCCAGCCGGCCAGCCATCGGGCTTGCTGAAGCTGAGATTGGTGGTTTCTGCGCCGGTGGTGGTCAAGGTGGCGTTCTGCTCACCAGCGACCTGGCCGTCCTGATAGGTGAGCTTGGCCGAAACCGACACGTTGCTCGCGCTGCCATCGGTTTTCACCGAGACGATGATGGTGTCTTTGCTGGTGATATTGGCCGACGGGGTCACTGTCTTGTCTGCGGCAGCAGTGGTGCCGACCGCGACGCTGGATACCGTCACTGCCGCACCGGTTGCGGAAGCACTGTCGGTACTGGCAGCACCGGTGGCAGTGCTCTGGCCAGCCTGATCGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //