Array 1 1289-2348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKXY010000047.1 Klebsiella pneumoniae strain IR5082 Scaffold47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1289 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 1350 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1411 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 1472 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 1533 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [1587] 1587 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 1648 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 1709 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 1770 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1831 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1892 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1903] 1954 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [1965] 2016 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [2027] 2078 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 2139 29 93.1 30 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCA 2199 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 2260 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 2321 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 95.2 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 261511-263000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKXY010000006.1 Klebsiella pneumoniae strain IR5082 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261511 29 100.0 32 ............................. CATTTCATAGTGATTCGACTATTTAATTAACA 261572 29 100.0 32 ............................. AGTTCACGACAGGCAAAGTCTTTACGGTATGC 261633 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 261694 29 100.0 32 ............................. TTATTTCTAAACTAAGTTTTGTTTCATGCAGT 261755 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 261816 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 261877 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 261938 29 100.0 32 ............................. CGTGAGCATCTGGGCATCTTCAGTGATAGCGT 261999 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 262060 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 262121 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 262182 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 262243 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 262304 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 262365 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 262426 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 262487 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 262548 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 262609 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 262670 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 262731 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 262792 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 262853 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 262914 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 262972 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //