Array 1 981729-979137 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDO01000013.1 Klebsiella pneumoniae strain K329 K329_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 981728 28 100.0 33 ............................ CAGTTGAAACTGACCCGGCACTAGAAACCATTC 981667 28 100.0 33 ............................ TCAGGATGACGGAGGAAAACCCGACTCAGGGTG 981606 28 100.0 34 ............................ TATTGTGGATGCGTGGAACCACTTCATTGACGCA 981544 28 100.0 33 ............................ TATACCGGTCAACTCTTACACATACGTGCGCGA 981483 28 100.0 33 ............................ TAAAGAGCATGACCCGACGTGGAAAATATGGGT 981422 28 100.0 33 ............................ CAAACACCAGGCCGCGCAGCTTATCGAAGTCCT 981361 28 100.0 34 ............................ TTTCATCGAGCCACAATCTTTGGCTTGGTGGATA 981299 28 100.0 33 ............................ TAATGTCACCAATAACAGCAGCGGAGCAACAGC 981238 28 100.0 33 ............................ CACACACATTACGATTCGGGTCGGAGACATATT 981177 28 100.0 33 ............................ CGCCTATATTCAGCAGCGAGTGGCGAACAATAA 981116 28 100.0 33 ............................ TAAGGTGGTGGCTGAGCGCTCTGATAAAGGCAG 981055 28 100.0 33 ............................ TGACAAGGCCACAGGTGAAAAGAAAGAGCAAAC 980994 28 100.0 33 ............................ TTGAAGAAGTAGTCACAACGTTGTTTTGCAGAG 980933 28 100.0 33 ............................ TAGGCCGCTTCCTGCCGTGAGCTGTTCACTGGT 980872 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 980811 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 980750 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 980689 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 980628 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 980567 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 980506 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 980445 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 980384 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 980323 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 980262 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 980201 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 980140 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 980079 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 980018 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 979957 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 979896 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 979835 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 979774 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 979713 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 979652 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 979591 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 979530 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 979469 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 979408 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 979347 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 979286 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 979225 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 979164 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 43 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 991121-990482 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDO01000013.1 Klebsiella pneumoniae strain K329 K329_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 991120 28 96.4 33 .............A.............. TAGCTGAGGAAAGACGGACGTGGCGTGATGCAA 991059 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 990998 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 990937 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 990876 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 990815 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 990754 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 990693 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 990632 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [990627] 990570 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 990509 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.4 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //