Array 1 2509932-2509111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOVC010000001.1 Escherichia coli strain YSP4-1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2509931 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 2509870 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 2509809 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 2509748 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 2509687 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 2509626 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 2509565 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 2509504 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 2509443 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 2509383 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 2509322 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 2509261 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 2509200 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 2509139 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2537002-2535631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOVC010000001.1 Escherichia coli strain YSP4-1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2537001 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 2536940 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 2536879 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 2536818 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 2536757 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 2536696 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 2536635 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 2536574 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 2536513 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 2536452 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 2536391 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 2536330 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 2536269 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 2536208 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 2536147 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 2536086 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 2536025 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 2535964 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 2535903 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 2535842 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 2535781 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2535720 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2535659 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //