Array 1 735-1970 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCE01000034.1 Neisseria meningitidis strain M38608 M38608_CHA4355A6_cleaned_ctg_9955, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 735 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 801 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 867 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 933 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 999 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1065 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1143 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 1209 36 100.0 30 .................................... ACGAAGCAAAAGGAATGATTGAACACTACT 1275 36 100.0 30 .................................... AATGTTAAACATTTTGTACGGAAAAAATAA 1341 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 1407 36 100.0 30 .................................... TGTTGTTGCAGGTCGATGGTTAGGGGTTCT 1473 36 100.0 30 .................................... TCCCTTAACCTGAAACGGAGTAATTAAAAT 1539 36 100.0 30 .................................... TGAAAACGCCGTCCTGAAAAACCGCGAACT 1605 36 100.0 30 .................................... ATAAAAAATAAAAAAAATCAAAAATAGTAA 1671 36 100.0 30 .................................... TATCTTCCATCGCCCACGTTTCAGGCACGC 1737 36 100.0 30 .................................... CCACTACCAATGCAGTAACCACCGCCCTGA 1803 36 100.0 30 .................................... ACAAAGTGTGATCTTTGCCCATGCCTACGT 1869 36 100.0 30 .................................... TGCCGCCCCGCGCCGCCGGTTTGCCGTTCA 1935 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 19 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //