Array 1 1792896-1793595 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXSZ010000001.1 Escherichia fergusonii strain RHB30-C06 RHB30-C06_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1792896 29 100.0 32 ............................. GAGCATTATATTTATTCGACGCTGACAGGCTC 1792957 29 100.0 32 ............................. GAGGCGTATCGCAGTGAATGAAATCGACCCAC 1793018 29 100.0 32 ............................. ACACGGGCGCAAAAACAATTGAACGCGCCAAA 1793079 29 96.6 32 ............................C GCGCAGGTGGACGGATTTGGACAACTGGAGAC 1793140 29 100.0 32 ............................. ACCCTGCCTCAATATTAGCTGTGCTGGATAAT 1793201 29 100.0 32 ............................. AACGCGCAACAGAACGCCGCCACGCCGTGCGC 1793262 29 96.6 32 ................T............ ATTTAAATCGCTATGCGCGTGATGTTATTAAC 1793323 29 100.0 32 ............................. GAACTGTCCGAACGCATTACGGGCATCGGAGA 1793384 29 96.6 32 ...........................T. ACGACGACGGCACACGAGCGGTTAATCCCGAC 1793445 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 1793506 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 1793567 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1808555-1810048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXSZ010000001.1 Escherichia fergusonii strain RHB30-C06 RHB30-C06_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1808555 29 100.0 32 ............................. TTTACATCAATGAACAGATAGTTTTTACGCTG 1808616 29 100.0 32 ............................. ATCATCATCACCGATGTGCATTCCGATAGGAT 1808677 29 100.0 32 ............................. AGACTGGCGGCAGCGATAATAAATACATGAAA 1808738 29 100.0 32 ............................. ATTCCCTGCTCGTAATACGCGTCGTATAGCGC 1808799 29 100.0 33 ............................. TAGCGCTTTGCGGTGTCCTCCAGCGTGGTTTGC 1808861 29 100.0 32 ............................. GTCGCGGTTGCAGTGCTGTCTTTCCCAGCTGA 1808922 29 100.0 32 ............................. GTCAGTTGCCTGATTTCGCTGGCAAAACGTGG 1808983 29 100.0 32 ............................. ACGTTAGTAAACAGCTCGCAGCACAACGCGGT 1809044 29 100.0 32 ............................. CTATGAGGCTGAACGAAACGCCATCATGCTGG 1809105 29 100.0 32 ............................. AGCAGGGCAAGGTTCGCCCGATGTACACCCTG 1809166 29 100.0 33 ............................. CTGATTATTGCGCGTGAATTACTGGAGCATGGC 1809228 29 100.0 32 ............................. AATCACTGCGCGCTCAGATTGCCGAGGTCACC 1809289 29 100.0 32 ............................. GTTTCAGTTGTGATATTTGAAGCGGAGTTGAT 1809350 29 100.0 32 ............................. AGGAAAACGGATGATGGAAACCCGTCGCCTGG 1809411 29 100.0 32 ............................. AGCGCGAATTATCAATCATTCAAGCGATCGGT 1809472 29 100.0 32 ............................. GGAAGCATTGCTTTTGCAGCGTCTTTCCGATC 1809533 29 100.0 32 ............................. GCTAATGCAACGTGGTTTTCTGTGCTGGATAT 1809594 29 96.6 32 .........A................... AATTTTACTGATTCAGCAGGGCAAATGAAATC 1809655 29 96.6 32 ...........A................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 1809716 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 1809777 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 1809838 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 1809899 29 100.0 32 ............................. CTGCTCATTGCCATTGCCCCAGCAATACCAGG 1809960 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 1810021 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAACTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGGTCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //