Array 1 75401-76222 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVEU01000011.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1291 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 75401 30 100.0 37 .............................. CCTTGTAAGATTGGTTTTATACTCATAAGAAAAGCGA 75468 30 100.0 37 .............................. GCAGACCAAGCAACTGAAAAAATTGGTTTTTTTACAG 75535 30 100.0 36 .............................. ATTTCTTCTGATAATTCTTTCATAACATCAATTTTT 75601 30 100.0 35 .............................. GCAACTCCTCTAACATCGCCCCTAATTTCACACGA 75666 30 100.0 35 .............................. GAAAAATGGCTTATTTGCAATATAGAAGCATATTT 75731 30 100.0 37 .............................. TATGGAATAACAGTGATCCGTTTTTAATTAATGATAC 75798 30 100.0 37 .............................. GCAGACCAAGCAACTGAAAAAATTGGTTTTTTTACAG 75865 30 100.0 36 .............................. ATTTCTTCTGATAATTCTTTCATAACATCAATTTTT 75931 30 100.0 36 .............................. AACTCAGGAAATCAACGTCAGGAACTAAACGGAAAA 75997 30 100.0 35 .............................. GCAACTCCTCTAACATCGCCCCTAATTTCACACGA 76062 30 100.0 35 .............................. GAAAAATGGCTTATTTGCAATATAGAAGCATATTT 76127 30 100.0 37 .............................. TTTTATAGTTTACATAACTATTATCTAAGTCACTAAA 76194 29 93.3 0 .......................-.....T | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.5 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : AAAAATTTAGATACTGTGAAGAAAAATTATTGAATCTTTCTTTTTATAATCATCAAGATAAAAAGAAAGAGGAAAGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATAATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTACTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAGTATAAAAGCATAATATTATGCTTTTTTCTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAACACTA # Right flank : TATTGTTAATAAAAATCTTTAGAAAATAACTTTAAATAATAGATTTTTTTTATTCAAAACTTGAAATAAGATTTACATAAAAGCTTAAAAAGGGAGATTCCATTCTCTCTTTTTTCATAATTTCTTTCTTTTTTATATAAAGTTTGCTATACTGAAGGTGAAAACTCGTGAAAGGAAAGAAAGCATGGAAAAAGAAAAAATCAAGGAAATGTTGGAAGAACGCTTTCAAGTAATTCCTGCATACCCTAGAAAACGACATATTCTTTTTTGGTATGATGGACAGAAAGCATTTCAAGATATTATAGAGGAATTACAGCTTGATAAAGTAAAAATCCTTCGTTTGCAAAAAGGAGTCAATCGAAATGGAGAAGAAATTGATACCAATCTTTTTAAAATAAAATATACTTTGGAGATTTTGGATACGGATTCTCATTATTTAATTTATAGTGCTAATCCAAGACCCTCTAAGCATGAAAATTATCTCTTAGATATAGAAAGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-88.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 95958-97447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVEU01000022.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1291 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 95958 30 100.0 37 .............................. CTGGATTATAGATTTAACAGGATGATGGATGGAAAAA 96025 30 100.0 34 .............................. GCAGGAAGAATTCATCATATGATAGTCCATCAAC 96089 30 100.0 38 .............................. TTCCTTCGTGTCCGATGTTTGTATTTCGTCTTGAAGTT 96157 30 100.0 36 .............................. TGATTTTTTGCTTGCAATCTAAAAAAATATTGTATA 96223 30 100.0 37 .............................. GTCAAAAGAGAGAATAAGAAAGAAAAGAAGAAGCTAT 96290 30 100.0 37 .............................. AACTTTGAAACGGTTTTGAGTTCAATTTCTGAAAAAG 96357 30 100.0 35 .............................. AATGTAAAAAAAGATTTTTACAAGCACGAGTATAG 96422 30 100.0 37 .............................. TTTTCCCTCCTAGATGTTTCTTTTCATTTTTTCAAAA 96489 30 100.0 36 .............................. TTGCATCTGTCGAGGCGGCTAGAATTATGAAGCGTT 96555 30 100.0 35 .............................. TCACATTCACAGTCGCTTGATTGACTGCTGTGGGC 96620 30 100.0 36 .............................. TTTTTTCCCTCTCTTGCAGCCATTCTTTGATTAGAA 96686 30 100.0 35 .............................. TCACATTCACAGTCGCTTGATTGACTGCTGTGGGC 96751 30 100.0 36 .............................. TTTTTTCCCTCTCTTGCAGCCATTCTTTGATTAGAA 96817 30 100.0 35 .............................. TCACATTCACAGTCGCTTGATTGACTGCTGTGGGC 96882 30 100.0 36 .............................. TTTTTTCCCTCTCTTGCAGCCATTCTTTGATTAGAA 96948 30 100.0 38 .............................. TCAATTTTTTCTTGATGGTTAGAGCAATACTTATAACC 97016 30 100.0 37 .............................. TTTTCCCTCCTAGATGTTTCTTTTCATTTTTTCAAAA 97083 30 100.0 38 .............................. AACGTCCAAAGGCTTTCAAGCGTAGGACTTCTAAACAA 97151 30 100.0 37 .............................. GAAGCAAGGAGACATACATAGACAAAGAAAAATATTT 97218 30 100.0 36 .............................. TTTAAACTTCCAAACTTCTCTCCCTCATTTAACAAA 97284 30 96.7 36 ...............A.............. TTTAACATCCCAATACTTCTTCCGCCGTCTTGTAGA 97350 30 96.7 37 ........................A..... TTTCTTACTATCTGGAAACATGCTATTTTTTCAACAA 97417 30 73.3 0 ..C........TT....A.TT...TA.... | T [97439] ========== ====== ====== ====== ============================== ====================================== ================== 23 30 98.6 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TTTGAACTATAACTAAAAAAGAGGTAAAAATGTTATGTTGGATTAAAAATTTGCAATATATGGGTTCATTATTGAAGATTGTTTGAGAGTTTCTTTTGAATTAAAAAAAGGGAGCTTTCATTGTAAGAGAATACGTAAGGATATGGTACACATAATCAGGTTACTGGAACTTCGTCCGACGACATCACCGTGATGTTGACAACTTTAGATTCCTTAAAACAAAGTGAAAGAGAAATTAATATGGAAGATATGAAAAAAAGATTTAGTAATTGTACAAATGACGAGATTGACAAGAGTTCAGAAATTACACATGTTCACTCTATTTCAAAAGAAGCTTGCAGAATTTATGTGGAAATAGTGAAAAGTCTGATTATAAATAAAAATTTAAAAGACATCTTAGAGAATTTGGAATGTACAAAAAATTTTCAAGATTAAAACATCTCGATACTTTGTAGGAAGAGCAATATATTATGAACGCTTTAGGAGGTAGTTTGTGATGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //