Array 1 682530-679197 **** Predicted by CRISPRDetect 2.4 *** >NC_003901.1 Methanosarcina mazei Go1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 682529 37 100.0 37 ..................................... TAATATCCTGACTTAACACCGCTTTTCGGTTTATTAT 682455 37 100.0 36 ..................................... CAACTGCATTTTCAATACTCCAGGGCACGATGGACT 682382 37 100.0 37 ..................................... TACTTTAAACACATAATCTCATATAGTGATTATCATG 682308 37 100.0 38 ..................................... GTAAAAGGTGACACCTATCCACTGAAAAACACTATAAA 682233 37 100.0 39 ..................................... TTTTTAGAGCTTTATTTTCTTTATTTACATCTTGTTCAT 682157 37 100.0 36 ..................................... ATTTCTCCACCCTGTAACGTTGTTGCACCTGCAAAT 682084 37 100.0 34 ..................................... CAATTCTATGCAGTTTTCGGCAGATGATTGTTAT 682013 37 100.0 35 ..................................... TTTCGTTTGCTGGCGGGCTCAAAGTATATTTTCAG 681941 37 100.0 37 ..................................... AGGATCAGGACGACGGCAATAATACTGAAGAATCCTT 681867 37 100.0 35 ..................................... ATCGGGCTTGTCCTCGGAAGAACAAAAGAAAACGT 681795 37 100.0 38 ..................................... CTCTTCTGGCCCTCCTCGTGCTCTCCTGCCCCCGGATA 681720 37 100.0 37 ..................................... TTGAGAAAAGTGAGTTGATTAAGGTATTATCAAATTA 681646 37 100.0 36 ..................................... TTCCTTATGGGGATAAAGACGGGCTAATTTTTGATG 681573 37 100.0 35 ..................................... CCGAAAAATCGAAAGGAATTTGATTTAATTCATCA 681501 37 100.0 37 ..................................... AACTAACTTGAGTTGAGTTTCTTTTCATCTTATCGCC 681427 37 100.0 37 ..................................... TTGAACAGTTTTCGTATCCTATTGGTAAAAGAAATCT 681353 37 100.0 36 ..................................... TTCCCCATACGTCCCCTATGCCGTCAGAGTCGTCGT 681280 37 100.0 34 ..................................... CTATCATGCTGACACACCCAATGCCCCACAAACC 681209 37 100.0 38 ..................................... GAAAGTTGGTTAAACTTTTTTATGGGTGTGATCGTCGC 681134 37 100.0 36 ..................................... GCCGCGAAGATTGCTCCTTACGTCTATCAGGTCACT 681061 37 100.0 36 ..................................... TTCCTCCGCGTTCTTTCGTTGATATAACATTTTCCT 680988 37 100.0 35 ..................................... TTCGCCTTATGTGTACACCATGTGTACACATACAA 680916 37 100.0 36 ..................................... TTATAGCCTTATCTTTCCCTGCAAGGATCTGAGAAA 680843 37 100.0 36 ..................................... CAATTCTAACTGTATTTTTGATTCTCTCTGTGACCT 680770 37 100.0 35 ..................................... TCAAGTACATTCAACGTGTCAATAGAAGATCAAGC 680698 37 100.0 36 ..................................... TGAGATAAGCCTCATTCAGGAACGGGTTAAGCTGTC 680625 37 100.0 37 ..................................... TTGATAAACCCCTAGAGGATCGGATAGCCTCTACTAT 680551 37 100.0 35 ..................................... TGGAAATACAAAAGCCATAGGCTATAGAGATGTTA 680479 37 100.0 37 ..................................... TGCTTTTCTCATTGATTTTATTTGATTTCAGATCTTT 680405 37 100.0 34 ..................................... TCCACCTCTTCCTGATTATCAGCAAAAAGGCTTT 680334 37 100.0 36 ..................................... AAAAAATAACTCTCTCTCTCAAACTGAGAAATTGGG 680261 37 100.0 36 ..................................... CATCGTGCTCTGGTTTCACGAAGGCGGGCATTATTT 680188 37 100.0 43 ..................................... TTTTTGATATTTTCCTCGGTGACTCTTGCCAGCGCGGGAACAG 680108 37 100.0 36 ..................................... TACTCTCAGGAGATTTCTGCATCAATGATCCTATTA 680035 37 100.0 37 ..................................... AAATCGTCCCTGCTGTGCTCCTTCATGTAATCGGCAA 679961 37 100.0 38 ..................................... CTGCCTCACTAAGCCTGAAAGCTTTCAATGCTTTAGCT 679886 37 100.0 36 ..................................... TATAAGTGGCGGGAATTACTCTTTCCGCGCCCACTG 679813 37 100.0 36 ..................................... CTTCCGAATAAAATGATATCGGCAGGTTTCCAGTCG 679740 37 100.0 35 ..................................... CTTATTATCTTTCAAGCTCTGTTACAGGCTCAGGG 679668 37 97.3 37 ..................C.................. TCAGGTCGACGAAGGTTTTGAGGGCTGCAACTTTCGG 679594 37 97.3 34 ..................C.................. ACCATCCTCGTAACACATCGTATTAACTGGTTGG 679523 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 679451 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 679378 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 679305 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 679233 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== =========================================== ================== 46 37 99.5 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCTGAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 4095188-4089310 **** Predicted by CRISPRDetect 2.4 *** >NC_003901.1 Methanosarcina mazei Go1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 4095187 37 97.3 44 .....A............................... AAAAGACCCTCCTTGCTCTTGTCCTGCTCGGAGTGACCGCTCTA 4095106 37 97.3 35 .....A............................... CTAATTCACGTATGAGATCCTTGCGGATTTTCATT 4095034 37 97.3 35 .....A............................... TAAACACCTTAACATATTTATTTTTATTAGTTTTT 4094962 37 97.3 39 .....A............................... AGAGTGTCCAATTCTTCTCTTGTCAAGTAGTCGACGGGT 4094886 37 97.3 37 .....A............................... CAAAGAAGATCTTGACTATCTGAAAGAACATAACATA 4094812 37 100.0 36 ..................................... GAGATGAATATTACTTCATCATAACAGCACGCGCCG 4094739 37 100.0 34 ..................................... CGGTAAAAACCGCATAAGCTGTTCCGTTCTCAAG 4094668 37 100.0 35 ..................................... ATATGCAATAAGAGAAGGAGAAAAAGGAATGAACC 4094596 37 100.0 36 ..................................... TTGTTGCCTGTCCTTGCCCGTCTAAAACGGTGCCGG 4094523 37 100.0 34 ..................................... CGCCGTTTCCCGTGAGTTTAGCATTATTATAAAA 4094452 37 100.0 36 ..................................... TTGAAGAGAAACCACACTATACAGACAGTAAAGAGT 4094379 37 100.0 34 ..................................... GCTCTACCAGAATCAGAATAATCTCTGATATAAG 4094308 37 100.0 35 ..................................... ACATAAACATAATCACCTAATTTTACTTGTGGGGT 4094236 37 100.0 32 ..................................... TAGATGTTGTCGGGGGAGACATCTATAGCAAT 4094167 37 100.0 34 ..................................... ACTTGCAGTGCAACACAGTATCAGACAACACCAT 4094096 37 100.0 36 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCAACCTCTG 4094023 37 100.0 36 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTG 4093950 37 100.0 35 ..................................... CGAGGTTTCCGGCGGCTGCGCTTGGGCGTTGTTGG 4093878 37 100.0 36 ..................................... TACCAAATTAAAAACGTTGTCATTTTTGCGTTGTCT 4093805 37 100.0 34 ..................................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTT 4093734 37 100.0 35 ..................................... AAAATTCCTGCACTCGCGGGTTGACGGGCTGTATC 4093662 37 100.0 34 ..................................... TGATACGTCTCTGAATACTCTCTCGCGAATTCGT 4093591 37 100.0 37 ..................................... CAGCTTCAATGCCTATGACTCATGAAGAAGCTGAGAA 4093517 37 100.0 36 ..................................... TGTTAGGTTGTCCTATTCGACTCCGTACGCAGCCAA 4093444 37 100.0 35 ..................................... AAAGAGGGATCGAATGAAGATAGCCGGGGTAAAGT 4093372 37 100.0 36 ..................................... CCCGGTTGAGTCTTTTGAAGAACCAGAACAACCTAA 4093299 37 100.0 35 ..................................... AATTTCTGAGCTGCGCGTCTCTTGGCGTGCTTTTC 4093227 37 100.0 35 ..................................... TTACCTCCCATTGATCGGCTTCGGGATCACTTTTT 4093155 37 100.0 33 ..................................... TTAAAAATGGATAAGTTCTTATTTCGAGATCTC 4093085 37 100.0 34 ..................................... CAGATATCATGAAGTAATCCACACATGATAGCTG 4093014 37 100.0 36 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTTC 4092941 37 100.0 36 ..................................... CATTCAGAGTTTCCAGTGCAATAGCTTGGTTCTCGC 4092868 37 100.0 35 ..................................... TTCTAAAGAAATGAACCCATTTCAAGAAGAAAGTG 4092796 37 97.3 36 .................................G... ACCGGACAATGATCATATCAGTAATAAAGAAAATAC 4092723 37 100.0 35 ..................................... TCTTTAAGAGTTAGATTATTATTTGTTACATTAAT 4092651 37 100.0 36 ..................................... CAAATTCTAATGCTTCCTTCTGTTCTATTTTTTTAT 4092578 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCG 4092506 37 100.0 48 ..................................... GTAAACCATTCTTTAAGAGGGTCTACAAACTGCGCTAAATCAGCAGGT 4092421 37 100.0 35 ..................................... TTTCACAGAATGTCTTATAATCAGTACCCTTAGTA 4092349 37 100.0 34 ..................................... CATACCCAATTAATTTAGGATCATACACCGCCAG 4092278 37 100.0 36 ..................................... TGAATTCGGCAATTGCTTCATGCATTTCTCTGAGGG 4092205 37 100.0 38 ..................................... ATCATCAGTTGTTGAGTTCCCGAACAGCTTTTCGCCTA 4092130 37 100.0 35 ..................................... TTATTATGTCAATAATTTATGCGCGGAGAAAAAAC 4092058 37 100.0 38 ..................................... AGCTCGGATTATAAATAAGCCTCGCAAGCCAGAACCAG 4091983 37 100.0 35 ..................................... AATCGCGGCGAGAGTGGGGGCAGTCCTGCCGGCTC 4091911 37 100.0 35 ..................................... AGACACAAGAAAACAGGCCACATATCAGAGCAAAA 4091839 37 100.0 35 ..................................... GACTGTGCTGCTAAATCCCTTTCTGAAATGCATGA 4091767 37 100.0 35 ..................................... GGGGTCATTTGGTCAAGAGGGATTTTGAGATAATG 4091695 37 100.0 36 ..................................... TTTCCTGTCTCGTCCCGCCCTCTTTTCTAATTCCAT 4091622 37 100.0 36 ..................................... GAAAAAAGGGCGAAACCTGGATTGATCTATTAAACA 4091549 37 100.0 35 ..................................... AAACATGAAAGCTTATAAACTTGATAAAGGAAGAC 4091477 37 97.3 41 ....................T................ ATAAATTACCGGCTATGCCCTCCTGTTTGTAGCTGTATTGC 4091399 37 100.0 35 ..................................... ACGATAGGGCTGCAAGGCTGAGATCAATGGTATGC 4091327 37 100.0 34 ..................................... TAAGTTGCAAGGTTTCAGTAACAGCTTTCTCTTT 4091256 37 100.0 35 ..................................... CTCCCATGTCGCCAAACATTTTCGTAGACAGTCGT 4091184 37 100.0 35 ..................................... TAAAGTGTTTCTGCTAGACCCCAAAAATGCCCGAA 4091112 37 100.0 38 ..................................... CCACGTTTTCACATCCGAAGCGTTTTCCGCATTTCGTT 4091037 37 100.0 35 ..................................... TATAGATAAGGATGGGATTTACTGGAATTTTTACA 4090965 37 100.0 35 ..................................... TTTCAACTCACCTTCGATCTCGTCGCGGATGTAAT 4090893 37 100.0 37 ..................................... GATATACCTTATAGTGTATACGTTAAAGGTACACCGT 4090819 37 100.0 37 ..................................... TAAAGCTTCGCTTAATTTTCCGGACAACCTTCGAAAA 4090745 37 100.0 34 ..................................... TCCGGTTCGCCTGGTCGAACGCGTCGAGCGTCCT 4090674 37 100.0 37 ..................................... AGCGCTAGACCACGCACATATAGTATATCCTTAAAGT 4090600 37 100.0 38 ..................................... AGGATATACTATAAACGACGTACTTTAAGGATATACTA 4090525 37 100.0 38 ..................................... ACTGACTGTTTTCGCGATTGAATACATATACTTACGAA 4090450 37 100.0 36 ..................................... ACTCTAAAAGAACTCGGTTTGATCACGCTGAATCTA 4090377 37 100.0 37 ..................................... GCATTGAAAGCACAATGGGAATCTAAAGCACAAATCA 4090303 37 100.0 36 ..................................... CGATCCTTATATCTCCTGCGTCTGTTGCTGTCATGT 4090230 37 100.0 38 ..................................... TTATCCCTGGAAGATGTAAATCTATTCAGGAGAGTAGA 4090155 37 100.0 34 ..................................... TCGCCCGGCTCCTCCTCCTGCCGCTGTAGTATAA 4090084 37 100.0 38 ..................................... GATACTGGCGTTATACAGTTTTGAAGTTCGAAAATACC 4090009 37 100.0 38 ..................................... TCTGATATAATGAAAAATGCCTTCGAAGATGCAAATAT 4089934 37 100.0 37 ..................................... TTGAGAATCCACTGTCAAGATCCTGGCTTTTAGACAA 4089860 37 100.0 35 ..................................... TGAACATATTTTCTTGCCTCTTCTGTTGAATATCC 4089788 37 100.0 36 ..................................... TTGTACCTGTAATTAATGGAATTGGTACATAGCCTT 4089715 37 100.0 37 ..................................... TAGACACGACAGCAGGAAATGTTTATATTTCTAAAGC 4089641 37 100.0 37 ..................................... AACTCATTCCTTCTTGATGTCTGAAGCCAGCCTTCCC 4089567 37 100.0 37 ..................................... TAGACACGACAGCAGGAAATGTTTATATTTCTAAAGC 4089493 37 100.0 37 ..................................... AACTCATTCCTTCTTGATGTCTGAAGCCAGCCTTCCC 4089419 37 100.0 36 ..................................... TGATCGAGATAAAGATAACTGATGAAATGCGAGAAA 4089346 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ================================================ ================== 81 37 99.7 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAGAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGACCAAATAACGGAAATTTTTGCCCT # Right flank : TAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //