Array 1 466-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTG01000171.1 Phocaeicola vulgatus strain OM08-13BH OM08-13BH.Scaf171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ========================================================================= ================== 465 47 100.0 30 ............................................... GAATATGTGCATTGTCATAGGTGAGAGTAA 388 47 100.0 73 ............................................... AAAGCAGGAACTGGCTGCATACCTAACTGGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATNNNNNN 268 47 91.5 29 NNNN........................................... CGTTTTGTCAACGGACTGTGTCTTACTGT 192 47 100.0 29 ............................................... AACTTCCCTGGTTCATATTTTTCCTGTTT 116 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ========================================================================= ================== 5 47 98.3 40 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : TTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACCGTTTTGTCAACGGACTGTGTCTTACTG # Right flank : CTCTACAGTCAGCTTTCCAGCGTTATCGCGGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.82, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1956-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTG01000097.1 Phocaeicola vulgatus strain OM08-13BH OM08-13BH.Scaf97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1955 33 97.0 32 ................................A CATTGCGAATTCATACACATCAAGTCTACATT 1890 33 100.0 32 ................................. ATTTCATTTGCACCGTTGGATAATTTTGTAGG 1825 33 97.0 33 ................................A TGTCTGCCTTGCTTATTTCGGTTGCCAGATTGG 1759 33 97.0 33 ................................G TAGACTGATTGAAATCTTCACCGATAAGGGTGA 1693 33 100.0 33 ................................. CAAGAAAATGAGTATAACACCATCTCGCGTCTT 1627 33 97.0 32 ................................A CGAAAATCAAACATATCGATAAGATCAAAATT 1562 33 100.0 31 ................................. GTGTATACTCCCGGTACGGATGGTTATGTTA 1498 33 97.0 34 ................................G GGCATTGACAGGCGGGGATATCACAAAGGAGAGT 1431 33 97.0 32 ................................C TGCACATGCTGGATTTTATCGAGCGTCCGGGT 1366 33 97.0 32 ................................C GTCCTCCGGAACAACTGGAGGGTGAAGCCTTT 1301 33 97.0 33 ................................C AACAGTTGGGGGTGTCCGTAATGGGGCGTTCCG 1235 33 100.0 33 ................................. CTGACAGTAATATAGATACTTTAGCAGTAGATA 1169 33 100.0 33 ................................. CATGATGCGATACCGTATCAGTGATATGGCGGA 1103 33 97.0 33 ................................A AAAATGGTCTTACAACAACAATCTTATAGGATG 1037 33 97.0 32 ................................A TTATGCCGTTATGTTTAATGATTTTAAGCCAT 972 33 100.0 32 ................................. CCCGAATATCTGACATATTATGCTGTGATATC 907 33 97.0 31 ................................C CTTGAAAAGAGAAGATATCATGTTGCTGTTC 843 33 100.0 33 ................................. TACTGGGAGATGATATCCGATCTGGAGAACGGA 777 33 100.0 33 ................................. TTATTAGAATGATACACAACAACCAGCAAGAAG 711 33 97.0 32 ................................C ATGACGACCCAAAGCATAATAATCTTAACTTA 646 33 100.0 32 ................................. CTCCTCCGTGTATAGTTGCATTTATATCTATT 581 33 97.0 33 .............................G... CGAAATAGCGTAGCGATCCTTGCTCATCACAAG 515 33 97.0 33 ................................A CGCAATCCACCACTATCATAGCTCGGATGAACT 449 33 90.9 0 ....................A.........G.A | TA [426] ========== ====== ====== ====== ================================= ================================== ================== 24 33 97.9 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTACTATACTATCCCTTGTTGCTTATTTGTTATGTTATTGATTATTAATGTATTGTTATCTGTTTGTATCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //