Array 1 4870-3700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEK010000048.1 Escherichia marmotae strain C9-9 c_000000000048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4869 28 100.0 32 ............................ TGCAAATCATAATCAGTGCCGCGCGCCCACAT 4809 28 100.0 33 ............................ TATGAAAGGGCTGATGGCGAACTCGTAATTTAT 4748 28 100.0 32 ............................ AAAAGCGCCGATTTCCTGGCGCGCCAGCTCGG 4688 28 100.0 32 ............................ ATCATTGCGGACGCCAGCAACCGCGCGGAGTC 4628 28 100.0 32 ............................ CTTGCGGCGGCGAACCGTAAAAAAGACGATGT 4568 28 100.0 32 ............................ AGGCGGCACCTGGACTGATGAGGACCACAAAA 4508 28 100.0 32 ............................ GGCAGACCTGGAATCACCCACAGCGAACGACC 4448 28 100.0 32 ............................ ATTTTGCCGACGTTATCCCACGCCGCATATTT 4388 28 100.0 32 ............................ GTGTCGGTGAAAAATTCCTTCAACGACTCTTC 4328 28 100.0 32 ............................ GCTCGATAATGTGATCGACATGCTGCGCGAAC 4268 28 100.0 32 ............................ GCTGACATCGCCAACTTTATCGAGCAACAGCA 4208 28 100.0 32 ............................ GGGCGAAATTTTGATTCACCGTGATGACCATA 4148 28 100.0 32 ............................ CCACAGAGCTTGAGTTATGGGCTGCGTCTGTT 4088 28 100.0 32 ............................ ACTAAATAAGTGGTGTCGTCGCTGCCGCCATA 4028 28 100.0 32 ............................ TGCGCGGGCGTATCGCGGCACGTCTGCGCAAA 3968 28 100.0 32 ............................ CGGAAGTTGCGTCGCGGCTGAGTCCAAACCGC 3908 28 100.0 32 ............................ TAAAATCATCGCGGCACAATAATGCGCAGTCT 3848 28 100.0 32 ............................ GAAGAAAAAACAGTGGTACTACCGCCCCGCAG 3788 28 100.0 32 ............................ TTCAATAGTGTCCGCAATATCGTCAACGGTAA 3728 28 92.9 0 ....................T...C... | C [3705] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5209-5716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEK010000061.1 Escherichia marmotae strain C9-9 c_000000000061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5209 28 96.4 32 ...........C................ CGGAATTAAAAACCGTGGCTACTCTGCCGTTT 5269 28 96.4 32 ...........C................ AGGCGGATTAAGCGGGAAGCGCAGCAGAACGC 5329 28 96.4 32 ...........C................ AGACCAAATGGTCTGGCAAAACATTCCAGGAA 5389 28 96.4 32 ...........C................ GTCGAGCTGATCGACTTATGCCCCATCAGGCT 5449 28 100.0 32 ............................ AAAGCTTGATGACATTTTAGAAAATTCAAAAG 5509 28 100.0 32 ............................ ATGTACGAGGTTCGTGACGCGAGTGGCGTTTT 5569 28 100.0 32 ............................ TCATCCAGCGTTTTTTCTCGGTGATCAAATGC 5629 28 100.0 32 ............................ TGTTTGAGAACCTTCGCCGCATGGGGCATCAG 5689 28 85.7 0 ...............A....T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTATTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //