Array 1 4659-8923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLT010000015.1 Thermoanaerobacterium butyriciformans strain DSM 101588 Ga0454153_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 4659 30 100.0 39 .............................. CTTGCTAAACATTGTTTGGCCACTATCAGTTCGAGTTAT 4728 30 100.0 41 .............................. TGGGCTATCCATTTTAAGAATACTAATTGCACTATCTATAA 4799 30 100.0 38 .............................. ATGAGAAAAAATCTTATCAGACCAACTAAAAAGCCTGA 4867 30 100.0 37 .............................. GCTGGAATTGAGTATGGGAAATCTGCCTGATTGAATA 4934 30 100.0 36 .............................. TTCTCAATTTCTTTTATATATTGCTCAACTAGCGTA 5000 30 100.0 34 .............................. ATAGTTTGGATGATGTTCATGATTATATTTTGAA 5064 30 100.0 41 .............................. ACTGAAAAATTTCCTTTTAGTTTGCCTTGGGATGTTGTTTT 5135 30 100.0 39 .............................. TTTTATTAAAAAATTTTTTATAAAATTCACGTTTTATTC 5204 30 100.0 37 .............................. GCCGCAAATAGCGTTGGAGAAGGACAAAAATCTAATA 5271 30 100.0 37 .............................. ATCATCACAAACAAATAATGACACTGGAAGTGTTAAA 5338 30 100.0 37 .............................. TAACACGGCGATTTTTTGAACTGTAATTTAGTAGTAG 5405 30 100.0 37 .............................. CTAAAATAGTTAAATTTGAATCGTTTGAATTTGCGTA 5472 30 100.0 37 .............................. ATAGCAGTATTTATGATCGATGTATTATTAGGACATC 5539 30 100.0 36 .............................. GAAGTGATAAATTCAAGAATATCTTTTCCATAATCG 5605 30 100.0 38 .............................. ATGAAAACTGAATACATCAAGCTTTTAGAGTGCTTTAA 5673 30 100.0 35 .............................. CAATATCTATTTTTTATTAATTGCTCAATCTCCTT 5738 30 100.0 39 .............................. CCGGGACAAGTCAAAAATTTACATACGCAAAAATTAAGT 5807 30 100.0 38 .............................. AAATAATGACACGAGAGGAATGATTATATGATACCTGG 5875 30 100.0 37 .............................. ATAGCATTGCCTGTAATATTGTTAGTCAAATTATTTA 5942 30 100.0 38 .............................. ATAGATCTTAAAGCAGGAATTGAATTTGATGTATTTAA 6010 30 100.0 37 .............................. GGTGTAGATTATGAAGGAGACGATGAAGAAAAAGAAA 6077 30 100.0 37 .............................. GGTTTAATCCTCAGTCACAAACTTATGTAAGCCAAAA 6144 30 100.0 36 .............................. AATGGTGGTGCAAAGGAGATCTTTGAGGGAAGAGAA 6210 30 100.0 37 .............................. CTATGAAGCATTCTTCAAGTGGATCTATTTTAGGCAA 6277 30 100.0 36 .............................. TTATGAGATGGCGAGGGAAAAATGAGATCATTATAT 6343 30 100.0 37 .............................. AATGTTGCAGCTGTGAATGATGTCTTTGTTGCGTGTG 6410 30 100.0 36 .............................. GCGTCAGGTGCAGCAGGCACAGGCTTTGAAAGCTAT 6476 30 100.0 37 .............................. TATACATTGGAGACTTGGCAAAATGTGAAGATCTTAA 6543 30 100.0 37 .............................. TTGCATAAGCAGGTATTTTTACCGTCACATCTGCATT 6610 30 100.0 36 .............................. ATCTTCCCAGAAAGAAGGGAGTGAAAAAGTTGAACG 6676 30 100.0 37 .............................. TTTCTCTTCTGCCTGTTATATCGTCAATATAATACTT 6743 30 100.0 36 .............................. GATGCTCAAATTTTTGGTAAATTACATTGAAGATAT 6809 30 100.0 37 .............................. CAGGAATAAGTATTTTGCCTTTTCCTTTACAACCTCG 6876 30 100.0 37 .............................. AAGCAAAAATAAGAGGATATGGCACTATCACAAAAGA 6943 30 100.0 38 .............................. TATCCAATGACACTTTCCCGCCAATATCGTTTTCGTTT 7011 30 100.0 37 .............................. ACAATTTCAATATTCTCGGGATTATTTTGTACCTCTT 7078 30 100.0 36 .............................. ATGGTAATTCCGCATCTATCATATTGTTGAAATCTA 7144 30 100.0 36 .............................. TCCACAGTCCAAAAGAAAGCACCGGCAAGCGAGCCA 7210 30 100.0 39 .............................. ATGGCTCGTATGAGCGTACCGGGTGCAAAATGCTTTTGC 7279 30 100.0 36 .............................. TTTGTAGGGTACTTGAACTACTGCGTCGGCTACTTG 7345 30 100.0 39 .............................. GTTTTAGTTGTGTTAGGTTGTTGTTTTTACGCATCAAGT 7414 30 100.0 36 .............................. CACCTCCGACGCCACCGTCACCGCCTACAGGGCTAC 7480 30 100.0 35 .............................. TGTGATGAAAACCATAAATACCTTTTTGAACCGAG 7545 30 100.0 37 .............................. ATGGGTTGAAATATAATACTTGATACGGATTACACGA 7612 30 100.0 36 .............................. TCAAATTCAATTAGAGCCACAGAGATATTTAAGACT 7678 30 100.0 37 .............................. ATGGGTTGAAATATAATACTTGATACGGATTACACGA 7745 30 100.0 36 .............................. TCAAATTCAATTAGAGCCACAGAGATATTTAAGACT 7811 30 100.0 55 .............................. CCGCCTCGGATCGGGAGCCTTTCACCATAGTTACGCACATATAAAATATCTCCGC 7896 30 100.0 38 .............................. TATAATATACATTATCTTCTCCTAAAATATCCTTACTT 7964 30 100.0 36 .............................. CTTCCCCAATTATGTCTATTTCAATATTACCTTCGG 8030 30 100.0 37 .............................. ATTGTTGTCTCGCTAAACTCACTCTCGCCATTATCCT 8097 30 100.0 38 .............................. TTTCTTTGACGTTGTCTGGCTTTACAACTGGAAACCAC 8165 30 100.0 35 .............................. TATAATGATACAGATTGTCTGCCAAAATAATGAGA 8230 30 100.0 37 .............................. ATAATGTCTACTTCGTTTTTTGGCTTGACTAATTCTG 8297 30 100.0 35 .............................. ATTAAAGACACAAACAACAATACCAACACCTACAC 8362 30 100.0 36 .............................. TGAACAATTTGGCAGAACGCCGCCCTGGGAGCAAAA 8428 30 100.0 35 .............................. ACATTTTTATCACCCTCCATTTTAAAGTCAATCAG 8493 30 100.0 37 .............................. TCAATATCAGGAATAGAACCTGAAGAAACAATTGCAT 8560 30 100.0 36 .............................. TATAATGATAACATAGGACCGGAAATTTGGTATGGA 8626 30 100.0 38 .............................. ATAATAAAAAGCAGGTGTTTTTCATGAAAACCTGCCAT 8694 30 100.0 37 .............................. CTATATGTGACTTTTTTACCTGTTTTTTGTAAGCCTC 8761 30 100.0 36 .............................. AAAGAACAAGCGGAATCCATCGTCGGTGGTGGCGGT 8827 30 100.0 37 .............................. ACAATTGTTTTGCTAAATCTTCTCCAAGCCTGCCTAA 8894 30 86.7 0 .................G.......T.G.T | ========== ====== ====== ====== ============================== ======================================================= ================== 64 30 99.8 37 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATATAGAAAAAGACTGTCTTTATCATGAAATCAACAAATATAGCAAAAGCACAAAAAATATTAGGCATTGGCAGAAAGCCTAACATTGTGGAAAAAATACAGGAAGAAATATTTGAAATAGCACACAGATTGTGTTGATGATGTGTTGTGAGATGAACTACTTATTTTATCATAAATTGTAAACAAGCTGTGAATAATTTATAGCCAATTCGTGAACAAAAATAAAAAAAAAACATCATAGATAAGAAAAGTGAAATAGTATAAAGAGGAATTTGAAGAATTATGTAGAATATATTTATATAAAGTTGTTGTATTGAGTAATAATTTGTCGTCTACCTTAGATAGTGCAAAAAGTGCTGGTCATCGACGACATTTTAGGTATTTATCTTTTAAGTGTTTATTTGATAGTATGCGTGTTCACAGCATTATCTAAGATAATAGCTTGACATTGACCCGATTTTTAGAGATAAGTAAGTGACTATATAAAAGGAAGTGAATGC # Right flank : TACCTTTGGGAGAATAGACGCATTTTGTAGGTCTAAAAATTGAGCATTAAGAGATAAATAGTCATGCAAATAAGTATGGAAGGAGTACGGCATCATGGACAGGTTTAGAATATACATATTTCGATATCCGATAGGTTTTTCAGTAATTATTCTGATAATTTCAACAGTTTTTACGGAAATCCGTTTAGAACCGTATTTTACAAGTTTTATGGACATGCAAAGCGCCGCTTATGTTACGATGACCATCGAACAAGGTTTATTCAGCATTCTTTTGGTTGCCCTCATACGCGGTTTAGGACTAATGAAATGCGCCGGATTCACAAAGCCGAAAGAATGGAAACAATTATGGCTTCTATGGCCAATCCTAGTTCTCACCATATTGAACGGCACACCTCTTTTTGATGGGACATTGATTATCGATACTTCAAAACACGGACTGATTATACTTTACATACTTCTGAATTTATCGGTCGGATTTTGGGAAGAGATCCTTTGCCGGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 84449-82292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLT010000007.1 Thermoanaerobacterium butyriciformans strain DSM 101588 Ga0454153_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 84448 30 100.0 36 .............................. CAATGAGGAAACCTGGAGATAATCCCGAAAAAATAA 84382 30 100.0 38 .............................. TCGTCATTTTTCTTTGAACGTTTTTTCTTTGGTTTTGG 84314 30 100.0 36 .............................. AATACTTTTCCAACTTCTTCTATTTCCATTAGTTAA 84248 30 100.0 36 .............................. ACTTTTCCTGATTTAAACGGAAATATCTTTTATTAT 84182 30 100.0 37 .............................. TGGTGAACCTGGGTACAGTGAAAGCGGTAAGACAACA 84115 30 100.0 37 .............................. TGGCTCAGTTTAGCCGACTTCTACTCGACAGAATTAA 84048 30 100.0 37 .............................. AGACTTGCAAGGACAGAAACTACAGCAGCATTTGGCG 83981 30 100.0 36 .............................. TGTGGATTTTAGCCGCATACGCGGCAATTAAAATAA 83915 30 100.0 37 .............................. ACTGATGATCCACAACTTAAAAATGATCTTTTAAAAG 83848 30 100.0 37 .............................. AAAAATGAAAAATATGTTGACATACTGGCCCTTATAG 83781 30 100.0 36 .............................. CCTATGAGTTGTTTAAGAGTTTTGCTGTTGCTTCCA 83715 30 100.0 36 .............................. GCAAGTCCAGCCATGAAATCCGGCATCCAACTTTCA 83649 30 100.0 36 .............................. ATATTCTCTAGCTTTACTGCATTCGGCATTCCTTGT 83583 30 100.0 35 .............................. TCTTATATTTATTTTTTAAAATAAATATTCAGAAA 83518 30 96.7 38 A............................. TAGTGCCATCATAGCTGAACACCGCCAATATTGCCAAG 83450 30 100.0 36 .............................. GGGAATCTCTCATTCATACCAGTTATCAGCGCATTT 83384 30 100.0 37 .............................. CCAATGCTAATGTTAACCATGTCCAATCTCTATTTCC 83317 30 100.0 36 .............................. GGCGAATGTAATCCTCGCTTCTTCATATCCTCTTTA 83251 30 100.0 37 .............................. ACACTTTTCCCTCTATTACAATCTCTACATGCTGTAA 83184 30 100.0 37 .............................. TCATTAATGCCCCCCGTCTGCCACGTTGACTTATTAA 83117 30 100.0 36 .............................. ACAATATACCACTTCTAAAACAATTATTTCTAAATA 83051 30 100.0 38 .............................. ATTGCTAAAAATCGTTCTCCAAAATCAAAAGGAGAATA 82983 30 100.0 35 .............................. TGATTATTATGTTACAAATATGAGCGCACAACAAA 82918 30 100.0 37 .............................. GTAGCAGGCGTAAGCAGAGTATTCATTAATGATTATA 82851 30 96.7 36 C............................. TAGCGATAATAAAATTTTTGTATCCAGTAGTTGCTA 82785 30 100.0 36 .............................. TTTTATTCCTCCTCCCATTGGACGGTTAATATTTGA 82719 30 100.0 38 .............................. ACTCAAACATTAAGAGATAAAATTCTTTCACCAGAAGA 82651 30 100.0 37 .............................. AAACCATCTCCTAAAACTTCAAATCTCAAATTCCTCC 82584 30 100.0 36 .............................. TGGTGAGGTCCCCAGCAATCGGCTTCTGTTAAGTTA 82518 30 100.0 36 .............................. GCAGTAGACCTCGCAGAGATAAGCAATCCGGCAGAA 82452 30 100.0 36 .............................. ACGCCTAAATATTCCGCTATCCCTAATGATATTGTT 82386 30 100.0 36 .............................. TGGTGAGGTCCCCAGCAATCGGCTTCTGTTAAGTTA 82320 29 93.3 0 .........................-...T | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.6 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ATATACAGATGGAGTATGGTGGTATAACAGACATAGTAACCAAAGATTAGACGATTTGCTTGATTTTCGTATTGGAATTATTTATGAGATATCAAAGATGAAGTATCAAATTGAGAAAGAAAAATTGGGAAATAATCACTCTGCCCACTATGCAGAGTGATTAGATAAATTTTTCACTGTATTGCAATCGTGCTTTGCGGTGTCGATTATCTATATTTATTATAAAAAGTGAAAAATAAGCAATCATTTTTTTGTTTAATTTAACGGAGGAATTTGGAGAATTATGTAGAATATATTTACATAAAGTTGTTGTGTTAAGTAGTAATTTGTCGTCTACCTTAGATAATGCAAAAAGTGCAGGACATCGACGACAATTTAGCGATTTACCTTTTGAACTTTTATCATGAGGGAGGAGAGAGTGTTACATTATCAAGCATGATAGCTTGACAGTGACTTGATTTTTCACAAAAAAAGATTGGCTTTATAAGAGGAAGTGAATG # Right flank : AAAAGCCTTAGCGAACATTCTTTACCTTCTATGGATAAAAAGTTCATCAGCTAAAATTTTTTTAAAGTGGGTGTAAAGTGTTATGACAACATATTTTGATGAAAGTGCTAAAAGACAATTTTTTTTACTAAAATTTAAGGTTATGCTTTTAGAGTCTGATGGAAATGCATTTGAACAATTTGTGAGAAAGTTATTTCGTAAATATGATCCAAATATACGATTTACAAAACCGCAAGGTTCAAAAGGTGATGGTGGCAATGATATGTTCAAACCTCTTTCTGGAGAATATTATCAAGTATATGGTCCGGAATTTTTGTCAGGAACAAGTATTAAAAAAGCCGCAGAAAAGATAATAGATGATTTTGATAAAATATATAGCAATTGGAATATGCACTATCCAATAAAATCATATTATTTTGTTTATAATGATAAGAAAAAAGGTGTGTACCCAGATATATACATAGCTTTAGAAAAAATAAAGAGTAAGTATAATATACAGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1234-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLT010000069.1 Thermoanaerobacterium butyriciformans strain DSM 101588 Ga0454153_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1233 30 100.0 35 .............................. CTTGTGCATCTTCTTTTGTTAGCGTTTCTAGCCTC 1168 30 100.0 35 .............................. CTTGTGCATCTTCTTTTGTTAGCGTTTCTAGCCTC 1103 30 100.0 36 .............................. ATACCTAATGTAAAAGCATATTTACGTATCATTGCA 1037 30 100.0 37 .............................. GCAAACAACTCACGTGGAAATTGATACGTAACCTTTA 970 30 100.0 38 .............................. ATGGCAAAAGATATTTCACAACACACGACATAGTGAAG 902 30 100.0 37 .............................. CCTGCCAATGTTAATAATTTAATCCATATAATAAGAA 835 30 100.0 38 .............................. TATAATATCCGCAAGCTTCTTCATAATTTTTGTATTGA 767 30 100.0 35 .............................. CTAAACTCCCAATATCTTTTTTCTTTGCCCTCAAC 702 30 100.0 37 .............................. ATCAACAAAATAATGTTGCTAATAGTGCTAATAAAGC 635 30 100.0 45 .............................. TACAGACACTCACACAAGCGCAGCAAATTGCAACAACATTGCTGG 560 30 100.0 36 .............................. GTACATCTCCCGTTCCAGCTGTCGCATCTGTCGATA 494 30 100.0 38 .............................. GACAAAATGAGAGCAAATAAGCGGAAAGTGGACGCAAA 426 30 100.0 37 .............................. ATGCATTGTAATTTTGATTTGGCTTTTTAGTAAATTT 359 30 100.0 38 .............................. TACGGTAATTATACAACACCAGACGTTATGACTGATTG 291 30 100.0 36 .............................. AGAAACAAAGCAGAAGCTGGCAAAGCAACCGTAGCT 225 30 100.0 37 .............................. TTCATAGTGATTTCTTTATGTTCTACAAGCTGTATTG 158 30 100.0 36 .............................. TAGTAAAAACTTGGCGAGAGAAGTAATGAAAGGGTT 92 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 18 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : | # Right flank : CAGAACTATCTAAGCGAGAAAAATATTGTCGAGGCGTCTGTTTTTAGCCTACCTATAAGGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6564-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLT010000040.1 Thermoanaerobacterium butyriciformans strain DSM 101588 Ga0454153_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 6563 30 100.0 37 .............................. TAACAAGCTAGCAGAACAGCAAGAAAAGCTGGACAAG 6496 30 100.0 36 .............................. TTCATCAAATCCGTAAATCCGAGGCCCGTAGATTGG 6430 30 100.0 35 .............................. TATTACGGCGTCGCTGAGGTAGATTCCGCCTTTGC 6365 30 100.0 37 .............................. TTGAAAATTCTAATCCTATTTTAATTCTCGATTTCCG 6298 30 100.0 38 .............................. CCGCAGAGTCCGGAAGCCCATCAGAAGATATAGACCAG 6230 30 100.0 38 .............................. CAACATTAGAAGCATGTTGCTTGCGCTTCCCGGGCTTT 6162 30 100.0 36 .............................. CTCGCATAAGGCATGATTACGTTGCACGGAAAAGCA 6096 30 100.0 36 .............................. ATTCATATGTTCTTTCATCAACGTCATTGGATTTAC 6030 30 100.0 36 .............................. TTCCTGAAAATCCTGCAAAAGAGGTGCAAGATCCGC 5964 30 100.0 37 .............................. TTTGGCACCAACTTCAGACCAACTCTCACAATACCAA 5897 30 100.0 37 .............................. TTGGGACGGTCTCATTGACGACCTCCGCATCTCCAAC 5830 30 100.0 37 .............................. CTAACCCAACTGATTGGCATTACTGGGCATTTATTTG 5763 30 100.0 37 .............................. ACCGCATTGAACAGAACGAGGTTGAGCTTAAGAAAGC 5696 30 100.0 37 .............................. ATCATTTGGAGGCAACGGATGATGAGAATCTGATTGG 5629 30 100.0 36 .............................. TATCATTTTTAAGAAATATTTCTAACCTATTTTTAC 5563 30 100.0 36 .............................. TTGGTATAGGTTTCAAATAAGGTGGTATTCCGGGCG 5497 30 100.0 37 .............................. TGCAGCTTTGTTATCACAGCATTTAAAGTTGTTTCGA 5430 30 100.0 35 .............................. CATACAATATATTCCAATCGCCTCCGCTAAAGCCG 5365 30 100.0 36 .............................. TTTTCAGGCATATCGGCTATGCCTCAGACCAGAGGC 5299 30 100.0 37 .............................. TTCGCTCATTGTATACAATTTCGCCGCTACTCCCAAG 5232 30 100.0 36 .............................. TTCTCTCAAACATTCAATCACCGCCCTTATAAAGCT 5166 30 100.0 36 .............................. TCATCATCAAAAAAGGATATTTGCTTCGTCTGTTCC 5100 30 100.0 37 .............................. GCAGCAAACTTGGTGGTATGACGCAGGAACAGCGTAA 5033 30 100.0 36 .............................. CAAACTTTTTGGCTGGCATTTGGAACGGGATAGTAT 4967 30 100.0 36 .............................. CTGGCATGACATATGCAATAACAAAAGGATCAGGAT 4901 30 100.0 37 .............................. CATAATGATAAAGAAAGTCACGTGAAGTCACGTGACA 4834 30 100.0 36 .............................. ATTGTGTTAGTGTTGGATTATCAGTACCCCATACAT 4768 30 100.0 39 .............................. TCTTGGGCTTCAAGGATATTCGGCACAACTGAAGAAGAG 4699 30 100.0 38 .............................. ACAAAAGATGTAGAGCTTAGATATACATCAAGCGGAAC 4631 30 100.0 37 .............................. CTCATAATATAATGGTTCTCCTTTGTAATAATCTTTG 4564 30 100.0 38 .............................. TGTGCAGAACACCATAGAGGGAATGATAGCCCACATAG 4496 30 100.0 36 .............................. TAGTAGCGGTAAAGTTCATCACGTTAACATACAGTT 4430 30 100.0 36 .............................. TAATCCCACTATTTGAAAAAATACTATTACTATTAG 4364 30 100.0 37 .............................. ATTATCTGTTGAAAGTCAGACCAAATGATAGGATGAC 4297 30 100.0 37 .............................. TCTCGTATACCTTGCTTGGATCGTCATTAAGTAATAC 4230 30 100.0 36 .............................. GCGGTATATATCCGCCAACTGATGTTATTTTAGAAG 4164 30 100.0 37 .............................. CTGTTGTACCACCTCCTGCTGCCATGCCTTTTTCATA 4097 30 100.0 35 .............................. AGTAAATTGCATGAAAAAAAGAACCTTTGGGCTCT 4032 30 100.0 38 .............................. ACAATAGGCGTATTGGATATATGGAACTTAACATCTGG 3964 30 100.0 37 .............................. TTGTACCGAAAGTAATATTGAGATTATCCTTCAATGT 3897 30 100.0 38 .............................. TTTTATGCAGAAAGGACGGATATCTATGGAACTTGAAG 3829 30 100.0 37 .............................. CTTTACCTGTCAAAAACACATTAGAGCCTGTGTTAGC 3762 30 100.0 38 .............................. TACAGGGAAAGTACGATACGAGAAAAATAAATTATTAG 3694 30 100.0 37 .............................. TGGGGGGACGACTGCCAGAGGGAAGCACGACATTGCC 3627 30 100.0 36 .............................. TAGAGTGGACCATCAAGTATTAATGGATATAATTAA 3561 30 100.0 37 .............................. ATCAAATACAAATGGGAATGACGTATGACCAAGTGAA 3494 30 100.0 37 .............................. TATGTAGGCAATGCGGTGCGCTTGTTCCCGAGAATGA 3427 30 100.0 37 .............................. TTTTTTATCACAAAAGTATATAATATAAATATATAAC 3360 30 100.0 36 .............................. ATAGAAGCATTTACATTTTTTGTAGTTATGGATATA 3294 30 100.0 36 .............................. GCATAATATTCACCATAAATGGTTTGTCTTGATAAT 3228 30 100.0 36 .............................. CAGAAATAAATTTTGATGATCTACCATTTTAAATTT 3162 30 100.0 36 .............................. ATTCTGTAACAGGACAAAGTGTAGTAAATAATCATG 3096 30 100.0 37 .............................. TAAAACAATGGGATCGTAAATGAATTTTTACATATGC 3029 30 100.0 36 .............................. CATGCTTGATGCTTTGAGAAATGCGATTCACAATTA 2963 30 100.0 36 .............................. TAGAAAATGCCGGATTGCAAAATGTGCTATACTGTG 2897 30 100.0 38 .............................. ACATGGGAAGAAGGCGGAGATGTTAAGATGTTTGAACA 2829 30 100.0 37 .............................. ATAAGTATTGTGTTTGATTAGACCATGATCTTGTTCC 2762 30 100.0 36 .............................. AAAGACAAGATTTAGGTAATTTCTCTATGACAATCG 2696 30 100.0 36 .............................. GGTCTAGTATCAACAAAATTTATTTGTTGTGGATAT 2630 30 100.0 36 .............................. TGCTTGTATCCGCATTAGGAATGGTAATCATTCCTA 2564 30 100.0 35 .............................. CTTCAAAATAGTCAAACAAGTGTTCAACTTGATAT 2499 30 100.0 36 .............................. ATAGATGTTTGAATAACTGAATAGCCTCGCACTGCA 2433 30 100.0 37 .............................. CACTTAGGCCTAAAATATGAAATTGAAAGTGAAATTA 2366 30 100.0 37 .............................. TTTGATTTAGATGGGACGTCAGTTCCAGAATTAAATG 2299 30 100.0 37 .............................. TGGCAGTACCTAGGGCTATATATGCTGCTGCGGCTGC 2232 30 100.0 37 .............................. TAGACTCAGTCAAGGACGCTAACTTTTTGAGAGAAGA 2165 30 100.0 38 .............................. ACATGCTTTGCGCATATAGTTCCATAAAATCAGAACCA 2097 30 100.0 38 .............................. ACTGTTCCTCGTGAGTGGCTTGGGGAGCAGTTTTTTAT 2029 30 100.0 37 .............................. AAAGTCGTAAAAAAGAGGCTGAAGAATTCCAAGATTG 1962 30 100.0 37 .............................. TTTGTTCTGCTTTCAAACTTGCAAGCTCAAGCTCTCT 1895 30 100.0 37 .............................. GCTCATCTCTAAGCGTCTGTGTGTCGTATTCGTACAA 1828 30 100.0 35 .............................. CTGTTTGTCATTAAATAAATGTAAAAGTATTTTTC 1763 30 100.0 36 .............................. TACTCAGCCTTCAGATTATAATCCTCCCAGTAGTGG 1697 30 100.0 37 .............................. TTGTGAAGCAAAAGGCGCTGGGTGGCACCTGATGACC 1630 30 100.0 36 .............................. GCTAATAAAGATGTGACATTGAATCAAGTAGTAGGC 1564 30 100.0 36 .............................. AATCGCCCTCTGTTGCATCAACACGAAGATCATGCT 1498 30 100.0 38 .............................. AAAGATTGGGAATACCGATAACGCTAAAAGGTATCTCT 1430 30 100.0 36 .............................. TGCCGCGTGGAAATAACCAGTATGGTTCGGATGTGT 1364 30 100.0 38 .............................. AGAACGCATTTCCACAATGGAGTTATGGACAATATTTA 1296 30 100.0 36 .............................. CGGGATTTTGGATACAGCAAAAACGCTAGCGCAGAG 1230 30 100.0 36 .............................. TAATCCTTCACTATGACAAAAAGTATCTGCATGCGG 1164 30 100.0 36 .............................. ACCCATTTTTGCGAATTTCTATCAATGTCGAGGACA 1098 30 100.0 37 .............................. CAACAAAATTTGAAAAATAAACAGCTATTTCATCTAA 1031 30 100.0 36 .............................. TAATTAGAATGGAATATTTTCTTCGTCTATTTTTGG 965 30 100.0 38 .............................. TGATGTTGTTGGCAAAAATGAAACAAGTATCATTACAG 897 30 100.0 37 .............................. GCAACGTTGTATGCTTGTGCCAATTTGTCATTTCCGA 830 30 100.0 40 .............................. CTGTTAGCGGTACCGCCTTGACACTCGTCCAATGCGGTGG 760 30 100.0 36 .............................. TCTAATGTTCCATATTTTTTTGCCTCAATATTATTG 694 30 100.0 36 .............................. TTCTTTGGGGTCGTATTTGTAGTTTGAGAGCTCCTC 628 30 100.0 36 .............................. CATACTTCACCATTTCTATATTCACACACCATCATA 562 30 100.0 38 .............................. ATCCATTAGGTGCAGTAATATTAAATTCTTCTTTTGCT 494 30 100.0 36 .............................. ATGTTGGGAGCACTTCATTTGCCTGAAATCCTAGTG 428 30 100.0 38 .............................. TGGCTGGGGTGCAACTGTAAAGATACAAAACACGAATA 360 30 100.0 37 .............................. TTTTTTATTTCCTGCTTTTGCAGGTTGAGCGTTGCAG 293 30 100.0 36 .............................. TCAATAATCCTAATGACGCAAAATTTTTGGCAGATG 227 30 100.0 37 .............................. TGCTATCACTGCCTTTGCCCATTGCTGCCATTGCATC 160 30 100.0 37 .............................. ATGGAATTCCTTGTAGACGAGCAGGAACAAGCTAAAA 93 30 100.0 36 .............................. TTTGTCATAGCTCCGGTTTGTTTTGAACCACCTGAA 27 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== ======================================== ================== 99 30 99.9 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ATAAACTTGAAAAACATTTGATTGAGGAACAAGAATATAAGCCATTTATAGCGAGGTGGTAGATATTATTTAAGATATTATGGACATTATACTAAATGTTGCTAAAATTAACTTGGGAAATGATTTAAGGGAATAACAATGTTCATAATATTGGCATACGATATTGGTGAAATAAGAATAGCAAAAGTATTAAAAACATGCAGAAAAATATTTAAATTGGGCACAAAATTTCGCGCTCGAATGTGTAATACATGTATAAATTTTATTAAATTAAAGACTGTATTAAAAATAACAAAGTAGATATTATTATACGGATAAAAATATGTCGTCGAACCTAGATAATGTGAAAACAACCAAAGATCGACGACATATTTTTGTGAGATGAATTTTCTTGATATTTATAGATTTTTGTTATATCATAATAATGTAAATGAAAAAAGTAAATTAAAATTATCAATTACAGAAAATCTTGAAATTGTGATTTTATGCAAGTAATACGA # Right flank : A # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 93307-86537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLT010000010.1 Thermoanaerobacterium butyriciformans strain DSM 101588 Ga0454153_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================== ================== 93306 29 96.7 36 -............................. GCTACATTCAATGCTATATCTAGCGCAAAAGCTGTT 93241 30 100.0 38 .............................. AGAACTATCTAAGCGAGAAAAATATTGTCGAGGCGTCT 93173 30 100.0 36 .............................. GCTACATTCAATGCTATATCTAGCGCAAAAGCTGTT 93107 30 100.0 36 .............................. TAGTTTGCTCTCATGAACTCGGACATGCTGTACTTC 93041 30 100.0 36 .............................. AAGTGTGTTGGGTCTATATTCCCATGATAACAACTA 92975 30 100.0 37 .............................. TTGCTTGGCGAACCTCCAAGAATTACAGCCGGAGAAG 92908 30 100.0 37 .............................. TCTGACTAATAATTGAATTTAATCCCGTTGAAATAGC 92841 30 100.0 36 .............................. TAGTTTGCTCTCATGAACTCGGACATGCTGTACTTC 92775 30 100.0 36 .............................. AAGTGTGTTGGGTCTATATTCCCATGATAACAACTA 92709 30 100.0 37 .............................. TAAAATAATATCATTAAAAAGCACTCGCAAGAGTGTT 92642 30 100.0 36 .............................. TAGTGCGTTTTATTCTTTTTCTTTTCCCTGTGGCTG 92576 30 100.0 36 .............................. CACCCCCTGTGGCTGTACTACAAGGTTAAGGCCCTG 92510 30 100.0 35 .............................. GTTGCAATTCTGCTTCTTTTTAAATCCTGTGCTAT 92445 30 100.0 36 .............................. ATATAATAAATACCTTGTACTTAAAAAAGCGTCCTG 92379 30 100.0 37 .............................. CCGAATGTTATCCAGTCACATTTCAAGGCATAGGCAT 92312 30 100.0 36 .............................. ATCAGCAAAGTAATGTTGCTGACAGTGCTAATAAAG 92246 30 100.0 37 .............................. TTACCATCTGTGAGAGGAGAAAAGAAACAAGGAGGGA 92179 30 100.0 36 .............................. ACACGACAGCATTTCAGATGGAATTTGCCGAAGCGG 92113 30 100.0 37 .............................. AATATCAAGGACTATTGTTAGATGTATCATCTTTATC 92046 30 100.0 38 .............................. CGAAAAAGACGGAACAAAGCACTATGTCACAGAGGTGC 91978 30 100.0 37 .............................. TCTTTCTGCCTGTTTTTTCTTCTACAATTACCTCATC 91911 30 100.0 36 .............................. ATGATATTGGAAGAAAAATTGCACCGCTTACAAGAG 91845 30 100.0 38 .............................. CATATAATAATACTCAAAATGCTAAAGCTCTTGCTGTC 91777 30 100.0 37 .............................. ACACCAAGACTAACCGCAGTCATAATTCCCAAAATCG 91710 30 100.0 37 .............................. TACGTAACCGATAATTTTAAGTATTTATGTTCATTAG 91643 30 100.0 37 .............................. CAAGATGTATATACAAAAGAAGCAGATAAAGACGCAC 91576 30 100.0 37 .............................. TATGCTCTCTATACAAGTCATCTGCTAATCTTTGCAG 91509 30 100.0 38 .............................. AAAGCACGTCTCAAAAAGGCATATTCACTCCCAAAATC 91441 30 100.0 36 .............................. TTTCCCATTCAAAACCTCTTTACAGGTTCAAGCTCG 91375 30 100.0 37 .............................. ATTTCTTTACTATTTCATCTTCATTTTCTTCTATCCG 91308 30 100.0 37 .............................. CTTGTTCCCAAGTATAGGACGCCAAATCGTTCCAAAT 91241 30 100.0 38 .............................. TATTTTTTCAGCCACGTTCTAAACCATTCTGCTACTGT 91173 30 100.0 36 .............................. CAAAGCAATAGCGTCTAAGAATGGCATAAAAGACCC 91107 30 100.0 35 .............................. TTAAATTTTTGTGCTTCTTTTTTTAAATCTTTATA 91042 30 100.0 38 .............................. TTTTTTTGAGTTGATATGGATTAATACTATGCGTTGAT 90974 30 100.0 36 .............................. ATACCAATTATCAGCATTATTCTTGGCGGCTACTTC 90908 30 100.0 36 .............................. TACAATAGGTCAGGAAAGATACACTATGACAAGTCT 90842 30 100.0 36 .............................. TTTGGTCTATTCAAGAAGCTATGGCCAAGAATTTGA 90776 30 100.0 36 .............................. TGATGTTTCGGCGAGTGCTTATTTATTAAATGACGA 90710 30 100.0 37 .............................. AGCTAATGATGTCAGTAACATTGCCGAATGCAACAGT 90643 30 100.0 37 .............................. AAACGATGTACCGGATATTCAAGGCAGGTGCTACGAG 90576 30 100.0 37 .............................. ATTTCTTGGCGTGTGTGTATATATATATCTGCTGTGG 90509 30 100.0 38 .............................. TACAAAAATCATATCCTGCATTTTTAAATTCTTTCGCT 90441 30 100.0 36 .............................. AAGATAATTTTTGTGTAGAACCATCAATTAGAATAA 90375 30 100.0 37 .............................. ATATACATAATAATAATAAGTATCTAACAATTCGTTT 90308 30 100.0 38 .............................. ACAATTATACCGAGTTGTTTTAAAGGCTCTACTTCGCC 90240 30 100.0 36 .............................. TAGAAAAACAGGTACAAAGGCAACGGGTCAAGTTAA 90174 30 100.0 37 .............................. ATGCTGAATATGTTTTTCCCGAACCACTTGGTCCTGG 90107 30 100.0 36 .............................. CATCTCAAAAATGTAGTGTATGTGGACATATTGATG 90041 30 100.0 37 .............................. TCCTCTAGTGCTTGCAAAAGTCTTTTTTCTACATAGA 89974 30 100.0 37 .............................. TACAATGCCAACATTGGTCCGCTTATTTGATACGGAT 89907 30 100.0 37 .............................. CCCTCATCAGTAAGTCAATCCATGCCTGTCCTCTTGA 89840 30 100.0 36 .............................. AATGACAGCGACCAGAACATAATCGATTATTTAACG 89774 30 100.0 35 .............................. TTTGAACCTGTCAAAGAAACAAAGCGATACTGGCA 89709 30 100.0 36 .............................. TTGCAGCGAGTATTTTTGCTTCATCTATTCCTTTTT 89643 30 100.0 36 .............................. TCGCTTCCTTTTCAATATTTTCTGTACCCAGATAAT 89577 30 100.0 36 .............................. AGACATGGATGCATTGATATATGGCTTTTTGGCTGG 89511 30 100.0 37 .............................. TTGACGAAGGCAAAGAATTTGATGAAAATGGCGAAGG 89444 30 100.0 36 .............................. TGACTAATACGTCTCTTTCTATATCAGGATTGTTGT 89378 30 100.0 37 .............................. CCAACTTGTTTTGTCTGGCTTAAGTGATATGACTTTT 89311 30 100.0 37 .............................. ATATATCTTCATTTAAAACTTCATGCGTGATAGGTTC 89244 30 100.0 38 .............................. ATAGACAGTGCAGCCGTAGTATACGGACAAATTGATGT 89176 30 100.0 37 .............................. AATGACGAACAAGTTGCAGACTTCACAGTTGGAACAG 89109 30 100.0 37 .............................. TTTCATCATAACTTATTAAGCCGCTTGCTATTGCAAG 89042 30 100.0 36 .............................. TGCGATTGATTGGTAGGTTATCTTTTCCTCTTTTTG 88976 30 100.0 35 .............................. ATTCTGTTATAGTTTTGTATAGCTCGTCTATTTCA 88911 30 100.0 36 .............................. TGCGATTGATTGGTAGGTTATCTTTTCCTCTTTTTG 88845 30 100.0 35 .............................. ATTCTGTTATAGTTTTGTATAGCTCGTCTATTTCA 88780 30 100.0 39 .............................. CAGAGAGACAAATAGCTGCAGCTTTCGGTATAAAACTGC 88711 30 100.0 37 .............................. AAAATTGTGAAGCATGAGATCTTATCCCTGGATTTTT 88644 30 100.0 37 .............................. GAATTACATTCAGGACATATTAATTTTCCATTAACTC 88577 30 100.0 37 .............................. CAGCATCAACAGACACTCAAACACCTACAACACAGAC 88510 30 100.0 36 .............................. GCGATCACTGGCACTGTAAATACTGCCGGCACTGTA 88444 30 100.0 37 .............................. GAGCCTGTATTAGCTTCTTTGATTTCTTGGTCTTTCA 88377 30 100.0 38 .............................. CGCCTCCCATAAGCCCTATCAGCCATGTATATATACCA 88309 30 100.0 38 .............................. TGATATAATAGCAGAAGCAGGAATAACTGCGACATTAA 88241 30 100.0 37 .............................. GATACTATGTATGGGAATATGGAAGGATTATCGGCTC 88174 30 100.0 37 .............................. TCAAGTCTAATATATATTCACTAACGGAAATTCCTTT 88107 30 100.0 37 .............................. GCTAAATAGAAAAATATTGTGGCATCTCTAAATACAT 88040 30 100.0 37 .............................. AGGAGGAATAAAAATGTTAACAGCCATATTATCAAAA 87973 30 100.0 38 .............................. TTCAAAAATAATTCCGTCTTGATTGTACCGTTTTTACA 87905 30 96.7 38 .................C............ TATAGAATACCATCAGCAAAGCCTTCCTTAACTGCTAC 87837 30 96.7 37 .................C............ AACAGAAGAGATGATATGTCCATACTGCGGTTACACA 87770 30 96.7 35 .................C............ TCCGTATGGAGATGCCCTATATGACGACCTCCGCA 87705 30 96.7 39 .................C............ TTTCCTGCCAAGCAGGTTGAGCGTAAGTGGCGTTTCCGC 87636 30 96.7 35 .................C............ CCTCTACGGGCACCTGAAAAGAGGGTTAATATAAG 87571 30 96.7 38 .................C............ AATGGCGGTATACAAGAAACATATGTGATTGAATTAGG 87503 30 96.7 36 .................C............ CCATTACAAAAAGTATGAATATTTTGTTAGCTTTCA 87437 30 96.7 37 .................C............ AAGTTGTTATGGGACACACTAGGGCAGCCACAAAAGG 87370 30 96.7 36 .................C............ CCAGCAATGAAGTCAAAATCAATATCCATTTTTTCA 87304 30 96.7 37 .................C............ ATGCTTTTGGTGAGCTTTCGCCAACAACGCAGAAAGT 87237 30 96.7 37 .................C............ CATAAGGCATAGTTGCTCCATCGGGTACATGATCATG 87170 30 96.7 37 .................C............ AATATATTGGGTAGGTGGTTTATTATGATTTCTATTT 87103 30 96.7 36 .................C............ GCGATAACGTATCTGTCAGGAACACATGAAATTTTT 87037 30 93.3 37 .................C...........T TAGAGACCTTATGGCAACAGCCTGTCCGGGAACAAAA 86970 30 100.0 38 .............................. CTGATCCTAAAAATGATGCTATATATATTAAATTTTCC 86902 30 96.7 39 .................C............ TTTGGCATACCAATTGCAGTTGCTGGCTTGAGATAGTTT 86833 30 96.7 37 .......A...................... AGGTATTCTTTTATGTCGTCGTATTCTTCTTGAGTAA 86766 30 76.7 170 A..A........T........T.C...G.T ATAAAATTTTGGAGGAGTAAAAATGATGCCTTTTATTCCGAAAGAACTTGCACCGTATTTAATTATTGTAGAAGATGGATATAAATTAAAAGAATGTGCACCTGATAATGTTAAAAAGATGTTCCTTGTGTGGGTTAAAGAAGTTAAAAAGCTTGAATCAGAACAAGTTA 86566 30 80.0 0 ......GT.....T...........C.C.T | ========== ====== ====== ====== ============================== ========================================================================================================================================================================== ================== 100 30 99.0 38 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : | # Right flank : AAGAGTGGTGAGTTTTTATGTAAATAAATAAAAAATTAAACAATGATATTGTTGGGCTAAAAACGGTAGAGAGGGCACTATTCTGAAAATATATGACATCAAAAATTTATCAATAGGCTATTATGTAGAGTTATCCGAACATGATGGTGAAATAATTACAGTAACAGATGAACAAATAGATAAAATTATATGGGAGATGCCTCAAAGATTTTGATTTGTTATGTAATAAGTGAAAAACATTTTTATGATATAAAACATATATACAAGAAGGTGTTCTTATGTACGAAGAGGTAACAGGTTCATTGATGCAAAGTTATAATATATGCAAAAGGCAGGTGTGGCTCATGGCCCACCAGATAATTCCTGATCAAGAGCATCCGTATTTGGAAATGGGACGCTTGATCGATGACATATCTTATGACAGGGATAGAAAGAAGCTAAACTTTGAAAATGTTGTTATAGATCTTGTGAGAAATGACAATGGCAACCTGCTAGTAGGG # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //