Array 1 238858-239801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKUU010000003.1 Escherichia coli strain ZWEC161 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238858 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 238919 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 238980 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 239041 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 239102 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 239163 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 239224 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 239285 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 239346 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 239407 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 239468 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 239529 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 239590 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 239651 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 239712 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 239773 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265501-267237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKUU010000003.1 Escherichia coli strain ZWEC161 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265501 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 265562 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 265623 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 265684 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 265745 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 265806 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 265867 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 265928 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 265989 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 266050 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 266111 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 266172 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 266233 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 266294 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 266355 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 266416 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 266477 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 266538 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 266599 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 266660 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 266721 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 266782 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 266843 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 266904 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 266965 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 267026 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 267087 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 267148 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 267209 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //