Array 1 185-1926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOPF010000010.1 Kaistella sp. DKR-2 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 185 47 100.0 30 ............................................... GGTAAGTGCAAAACGTGTTTTTATGTATTC 262 47 100.0 30 ............................................... GGATATGGAATACAGTTTTCCAAGCATTCA 339 47 100.0 30 ............................................... TCTGTTTCGTTTTTCCAGGTGTTTTCATTG 416 47 100.0 30 ............................................... AGTCAGGGCTATCTCATCTGTGAGCTCTTT 493 47 100.0 29 ............................................... TTGGTGGTCGTCCGAAAGATTTTATTTTC 569 47 100.0 30 ............................................... TACCTTCGTGCGCACTACTTTCCAGTTGTT 646 47 100.0 30 ............................................... TATTTAGAACGATTCCAAATAGAGAATATT 723 47 100.0 30 ............................................... TATCTGCATTTGTTTTTCTTTCAAAAAGGT 800 47 100.0 30 ............................................... AATAAAGTAAAGCACAATATCGACCATTCG 877 47 100.0 30 ............................................... TATAATAGGCGTGACATTATACTCATTTGT 954 47 100.0 30 ............................................... ATGTGCCATAATTTATGATGCAGGAATAAA 1031 47 100.0 30 ............................................... TCGATGATCTGCATTGCGGAAGCGTCTGTT 1108 47 100.0 30 ............................................... CCTATTTGTTTAATTGCGGTTTCTGTTAAT 1185 47 100.0 30 ............................................... TACATTACCACTTTAAAACAACCTAAACAA 1262 47 100.0 30 ............................................... ACAGGTATAGCTGTGAGTTATTACGGAGGG 1339 47 100.0 30 ............................................... TTGGACGGGAAAGCCCGTGTTCTTCCTATG 1416 47 100.0 30 ............................................... AAAATTGTCACTTGTTCCGTTTTTCTTATA 1493 47 100.0 30 ............................................... TTCCCGTCTTCGTGAATGGTCAATGTCGCT 1570 47 100.0 30 ............................................... CCTTTCTCACGCTGAATAATTATGTTGATA 1647 47 100.0 30 ............................................... CTGAAATCCTATTTTCGCAACTTTTCCTGT 1724 47 100.0 30 ............................................... CAAATGAACGCGGGAAATCTTGACGGAAAA 1801 47 100.0 30 ............................................... ATATAATGTATGATATAATTCAACATACAG 1878 47 95.7 0 ................................G..........T... | A,T [1899,1905] ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.8 30 GTTGTGTCGTGTCACGAAGATAATAATTTTTGAAAGCAAATCTCAAC # Left flank : CGCTTAATGCTTCAACTACTACTTTAAATTTGAATCCTGAATTGAATTTTCTTCGCTGTGACATATTGTAAATTTAATTGTTTTTTTTCAACTAAACTTACTGTCCGATTTTCCGGGGGAACTATAATAATAATTTTTGAAAGCAAATCTCAACACAACGCCGACCGTGTATTCTTACGCCAAAG # Right flank : CGGTGTTGATGTATTGGGTTTCCCGATTTATGTTGTGTTGTATCCCAAAAGATATCGGGAAATGCTGTATCCCAAAAAACCCGAAAAATAAAAGAGATTGGCAGCATTTTGTAGCGAAGAGGGCAATTGAACCCGGTTGTACCGGAAACTAATAGCAAATTAAAGCAGATCTGACCTTATGCAGGTTCATCAATAAGTTGTGTTGTTCCCACAGACAAAACCTAAGGTTGCTCTGTTTCTCATTCTTTGAGCCAAACTTTTTTAGCACTCAGGTACACCCGCCCTCACACCTTCCTCGCAAAGAGATAAGTCGAGCTCCCACGAAGCGCAGCGGTGCAGTTTGGAGTCGCCGATTTGAGCAGGAGAGTGCCTGTCACCACCAGCCACGCAGGCTCATGAGGAATTTCACATGTCCAGACGGCTGGCGAGGTTGCTGAAAAGACGGAGATTTCCGCATGGTGGCTGCCGAGCAGATCAAGCGTCATGTTGCGGCCCAAAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTCGTGTCACGAAGATAATAATTTTTGAAAGCAAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 996-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOPF010000014.1 Kaistella sp. DKR-2 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 995 47 100.0 30 ............................................... ATACTACTCTTCTCATAACCCCAGCACTTT 918 47 100.0 30 ............................................... ATCTTTTTTAATTTCATTGATCGCCCGGAT 841 47 100.0 30 ............................................... ATTGGCCGGTTTGTTCACGAAAGAATTGTA 764 47 100.0 30 ............................................... AATTAAAAGCCAATCTTTTGAATCATATAT 687 47 100.0 30 ............................................... ACCAAGTGCTAAAACCTTATCGTCTTCAAA 610 47 100.0 30 ............................................... CGGGAAAAACAATCTTAATTTAACCGAGAA 533 47 100.0 30 ............................................... TGCGGTGCAATGGTTTGAAAAACGCGGTAT 456 47 100.0 30 ............................................... AAATGCAGTTAGGAGTTTCAATACAGTCAA 379 47 100.0 30 ............................................... TACCTACTTTCTCTCAAAAGAAAAAAGATC 302 47 100.0 30 ............................................... TTTGCCATTGATGTTGAATACGCGAATATT 225 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 100.0 30 GTTGTGTCGTGTCACGAAGATAATAATTTTTGAAAGCAAATCTCAAC # Left flank : GATTTCTTATCCTGAACTGATATGAATGCCGAAAGGTTTAATGCATACCGAATTATGTGGGTTTTAGTTTTATACGATCTGCCGACCGAAACCAAAGCTAATATGAGGGATGCCAATCTTTTCAGGAAGAGATTGCTGGATGATGGTTTTGCGCTGTTTCAGTTTTCAATGTATATGCGCAACTGCCCAAGCAGGGAAAATGCGGAAGTACACATCAAAAGGGTGAAATTAATGTTGCCTAAAGCCGGGAAGGTGGCCATTATGTGCATTACCGATAAACAGTTTGGTGACATTGAGATTTTTTTTGCAAGAAATAAAGAAGAGCCGCCTCCTACTTCTCAGCAACTGGAACTTTTTTAGAATTCATTTTAAGCTCATAAATTGAACATTAGCATTTCAGAAATGAGTTGCTCGGTTAAGATGACCAACTGAAAAAACCTGATTTTTAATCCTGAAAAAACCCCATAAACCTCCTTTTACAGGAGGTTTTTTTGATTGAG # Right flank : CTTCCGTTAAATCTTCTTTTTTCTGGATCCGGTTGTGTCGTGTCACGAAGATAATATAGTTCCCCCCAAAGTTTGGACAGTAAATTGTAAAAGTTAAGTTTGATTTTGTTTGTTTTGAGGGTAACAGTTTTGCAAATTTCCACATAGGGAAAATCCCTTCAAAGATTTTTCCGTGTAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTCGTGTCACGAAGATAATAATTTTTGAAAGCAAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //