Array 1 793032-794708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHI010000001.1 Gardnerella vaginalis strain UMB0540 ERS1455142_SC_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 793032 28 100.0 33 ............................ CAACAATACAAGCTATGAAAACACAAAAGATAG 793093 28 100.0 33 ............................ TAAAATATCAAGAGCACAAAATACCATTATATA 793154 28 100.0 33 ............................ CTAGAAGAATTAATAACCATTGTACTTTCAGTA 793215 28 100.0 33 ............................ CCATAGTTTGGCGGCTCATTTATACCGTACCGC 793276 28 100.0 33 ............................ CTAGAAGAATTAATAACCATTGCACTTTCAGTA 793337 28 100.0 33 ............................ CCAACCCTAGCGCATATAGTATAATAAATGATA 793398 28 100.0 33 ............................ TCTGTTAGCGGTGTTTCAGGTGTGCGCGATAAA 793459 28 100.0 33 ............................ TAATCCGCGCATTGTCAGCGCAGGTTACTATCG 793520 28 100.0 33 ............................ CCAAATAGACCAAGGCACCCCAAGCATCCTACA 793581 28 100.0 33 ............................ CTAAACCAATTGCCTTTTCAATGTCTGCGTCAA 793642 28 100.0 34 ............................ CCAAGGACGACAAGGAATCGCCCTTTGCGCCACG 793704 28 100.0 34 ............................ CCAAGGAGATAAAAATGGTTTTAATGATTCAAGC 793766 28 100.0 33 ............................ TTATTCCTGCGATAAGTTTTTCTACTTCACAGC 793827 28 100.0 33 ............................ TATCCGATATTGAGCAAGTTGAAGCAATGCAGG 793888 28 100.0 33 ............................ CATTCCCTAAATAATCCGTAAAAGTGTCATTAA 793949 28 100.0 33 ............................ CCAGACGAAACAGACGCGCGTGCTGAAACATTG 794010 28 100.0 33 ............................ CCAGACGAAACAGACGCGCGTGCTGAAACATTG 794071 28 100.0 33 ............................ TATAGTTGACTCTTGTTCACGAGAACGCGCGGA 794132 28 100.0 33 ............................ CTCTTTTAATTTTGATATACGGTCAAAAAAGCC 794193 28 100.0 33 ............................ TAAGCATCATACTATCTAAAGTTGTCGCAAAAA 794254 28 100.0 33 ............................ CTCATGTGAAAAGCTTTTCTCTTGTCTTTTCAA 794315 28 100.0 33 ............................ CTGTGCGAGTGTTATTATCTTTTGCTGTGTTTT 794376 28 96.4 33 .......................T.... CGCTTGTATCATATGTTTTATTAGTGTTTGTAA 794437 28 100.0 33 ............................ CGAAATCCTTTAATGATTGGCGATGATGTATAT 794498 28 100.0 33 ............................ CTGAACTTGATAATTTGGTTAATGTTGCTAATA 794559 28 100.0 33 ............................ TCGTGGAGTTTTACGAATCCAGCTGGCGACTTG 794620 28 92.9 33 ..C....................A.... TAAGCACCCTAAAAACGCGGCGGGTATAACCAC 794681 28 75.0 0 ..C..............T..ATAA.A.. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 98.7 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAG # Right flank : CTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGCTGATTGTTTTTACAATAGGGTAGGCAAATAAAAAACTTGCCTACCCCTTATTTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGTCCCTTTCAGCTCTTGCCATGATGACGGCAACTCTACGGGGCGGTGTAGGCGACGCATTGCCCAATCGCGGATCGTGTCATAATCCCACGCGGGCTTTGTTGTTAGTACGCCGACTGAGTGTGTTGGTAGTGGGATTAAACCACGGAGGTTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGAGCGCACGAGATATTGGCGCATAGACTCGTAGCCGACGCCAAGAAGCCGCGCAATATCATGTAGTGATACGAGTACTGTTTGACCGTTCTCATCTAACATAATAGGCTCCTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //