Array 1 14830-13886 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JNND01000073.1 Escherichia coli 2-011-08_S4_C3 e201108S4C3.contig.72_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     14829	    29	 100.0	    32	.............................	AACTGCTGGAATTGTTTGATCAATTACCGGAC	
     14768	    29	 100.0	    32	.............................	ATCATCACAGCCAGCCTCAAAGAGGTTGACGT	
     14707	    29	 100.0	    32	.............................	TACTAAAAGTCTGGTTCACGAATATCAAAAGG	
     14646	    29	 100.0	    32	.............................	CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT	
     14585	    29	 100.0	    32	.............................	TGATAAATTGTCCGCCCTGGCGGAATACCTCA	
     14524	    29	 100.0	    32	.............................	ACGGCTTCATGTTCTTGGTGATGGGGTTCACC	
     14463	    29	 100.0	    32	.............................	AAAAAATGCGACGACCGCAGCCATTCCGATCT	
     14402	    29	 100.0	    32	.............................	TCATACGCCTGGTATAGCGATCATCCCGATGA	
     14341	    29	 100.0	    32	.............................	GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT	
     14280	    29	 100.0	    32	.............................	AGTCTTTAATCAAAATGGATTTTTATAATGAA	
     14219	    29	 100.0	    32	.............................	GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA	
     14158	    29	 100.0	    32	.............................	CGGTGGCAGTGATGAGGCGTTCCCAATTAATG	
     14097	    29	 100.0	    32	.............................	CCAGCCGAAACAACGCCAGCAAAATCGACCGC	
     14036	    29	 100.0	    32	.............................	GGATATAGAGCGGGTACTTGAGCGGAGCGGGG	
     13975	    29	 100.0	    32	.............................	TTTTTGTTCTCTTCAAAACGCCGAACAACCAA	
     13914	    29	  93.1	     0	............T.....A..........	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.6	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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