Array 1 946667-946471 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_000921.1 Helicobacter pylori J99, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence          	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=========================	===================================	==================
    946666	    25	 100.0	    29	.........................	GGTGTCGTTATTAAAGCTAGTATTGTCAT      	
    946612	    25	 100.0	    32	.........................	ATTGCTGTTTTCAAAAGTGGATTGGGCGCTGT   	
    946555	    25	  88.0	    35	....G.G......C...........	ATTGCTGTTATTGAAGCTTAAAGTGGCGCTGTTAC	
    946495	    25	  96.0	     0	.............C...........	|                                  	
==========	======	======	======	=========================	===================================	==================
         4	    25	  96.0	    32	TAAAATTATAAGTGCCTTGATTGAA	                                   	       

# Left flank :   TAAACCTTGAGCGTCTTTAAGGATAGTGGGGTTACTGCTTTGAGTGTAGCTTGTATCGTTATTTGCGATCGTGTTGTCGCTAGCAACCTTATTCAAAGCGTTCTGGGAATTAGCTACATCCTCTTGATAGGTTTGTTGGGCTTGTTGTTGTAAATCGTCTCCTAAAAATTGGGTAATAATAGATTGGTTGCTAAAGGTTTCTTGTAAGGTTTCATCTTGCCCGTTAATGTCAAAGGTTACATCATAAGTGTTATTACTCACTTCAACATGGCTAATGGCTTTATCGCCCTTATAGTTGATTAGATCCCACAAATAGCTTTGATAAACCCCATACTGGATCGCTCCGTTTGTAGTGAGAATGTCATAGGTTTGATTATTATTAAGGGTTTGATTGAGGTTAAAAATCGCACCAGAATTAAAAGACACACTGCCTTTAAGGCTAGCAAAAGGCGAACTTGAATTTAAAGTGTTAGCGCCTGAAAAACTCACCTTGCTGCTAT
# Right flank :  GCTGGTTTGATTGAAAGAGATGGTGCTATTATTGTTATTACCGCTGAAATTAAAACCTCCATTGGTGTCGTCTGTAAAGCTAGAGCCACTGATCTTGATATTAGAGCCTTTAAAATTCATGTAAGATTTTTGTGTCCCTGCATCGCTGTTATCAAAGCTCGCTTGATTGATAGTGATATTGTTAGTCGCGTTAAAATTGAGCGTGGTCCCACCGCCATCAGCGTATGAGTTTCCGGTTGTGATATGGCTAGAATTAAAATTCATCGTTTGAGCATTATAAGTTCCAGTGATATACCCTACATCACCTCCATTAATACCTGTGCCTCCAAAGCGGATATTCCCCCCTATATCAAGCGTGCCACCATTGAATTTTTGCGTGAAACTAGCCCCACCAGCGCTATAAGTGGTAAGAGTGTTTAAATAATAAGTCCCAGAGCCTTGAGCGCTACTAAAAAGACAATAAGAGTTGTGCGTGGGTGAATTAGGACCGCTTTCAATAT

# Questionable array : NO	 Score: 2.66
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TAAAATTATAAGTGCCTTGATTGAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:76.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//