Array 1 190545-190212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODS01000001.1 Kitasatospora purpeofusca strain NRRL B-1817 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 190544 28 100.0 33 ............................ CCAGCGCGGCCCGGAAAGCCGCGATCTTCGGTA 190483 28 100.0 33 ............................ CTACGGGCACACCGCGCCGGACGGCACCCCCGT 190422 28 96.4 33 ..........C................. CGTTGCGGGTCAGCATCTCGCTGATCTCGGTTG 190361 28 92.9 33 ..........C.............C... CCGGCTCGGGCTGCCCGGTGTGGTTGTAGACAA 190300 28 92.9 33 ..........C.A............... CGGTCCCCTCACCAGCCACCGCACCTCTGGGGA 190239 28 89.3 0 ..........C...........C....G | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.2 33 CTGCTCCCCGTACGCGCGGGGTTGGTCC # Left flank : AACCTCCTCGCCCTGCTGAAGGACCGGCCGTGACCGCGACTCGGCTGCTCGTCGGGATCGCGCTCTCCTTCCTCGCCCTCCTCGCCCTGGCGACCGTCGTGCTCGGCGTCCGCCTGGTCCTGCGGATGCCCGGGCGGCCGGAGGACGACGAGTTGTCGGACTGACGCCGCCGCGCCGACCAAGGCCGTTCGAGGGCAGGCGTCGGACGGTCTCGGCACCTTATGACCGGCAGGTGGGAGTCGGTTGGCGGAAGGCGGTTGCCGCGAGGCCACTGCGCGACCACGTTGGCCGGAGGACCGTTAGGTGGAGGGGTCGAATCGGGCAGGGGTACTCGGCCTGGTTTCACATCGTCGGCCTGAGGTCGGGGTTGGGCGAGGAGTAGGCTCCGGTTGATCCTCAGGGCTTCTGGGGTAGTGATGGTGGAGATGCATCAGATGTCCGAATTTCGAGAAGTTGCAAGCACTGGCTTCTCCGCTGCCTGAAGGGGCAGGTCACGAACT # Right flank : CAAGACCACCGGCACGACCTGTCTCAGCTCTCCCGGCGCACGCGGTATCGACATGAGGTTCAGCGCTCCCTCCCCTTCGCCGAAGGGGAGGGAGCGCTGGGTCGAACGTGAGCCCCCGTGGTCGAGGCGTTCGTTCCCCGAGCCCTCGGGCTGACCCGGCGGCCTCGACCCGTCGCGGCCGCCGGAAACCCGGTGCCACAAGACTGCCGCGTGATCGCGTTAATAGGGCATGGAGCAAATACAGGGGGCGCCGCCCGACTTTCCGGCCTTCGTGGCGTCGCGGGGGCGCCATCTGCTGCGGACGGCGTTCCTCCTCACCGGTGGTGACGCGCACCTCGCCGAGGACCTCGTCCAAGAGGCCCTCGGCCGGGTCTTCGTGAAGTGGCGTCGGATCTCGCGCATGGACAATCCCAGCGGCTACGCGCAAGCAATCCTGGTCAACACCTTCCTCTCGCACCGCCGTCGGCGCAGCAGCACCGAGCGGGTCACCGATGTGCTGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 197812-197660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODS01000001.1 Kitasatospora purpeofusca strain NRRL B-1817 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 197811 28 100.0 33 ............................ CTCGCAGCCAGTTGTGGGGAGTTGCGATCCACT 197750 28 96.4 35 .....................A...... CTACTTCGGCTGGCACGTCTGTGTGGGGCGAGAGG 197687 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ =================================== ================== 3 28 97.6 34 CTGCTCCCCGCACACGCGGGGTTGGTCC # Left flank : CTCGCCACCACCGACCTCGGCCTGTCCGGCGCGGCGGGCTTCTACGGCGTGCCGCGCTTCTTCGGCGACCGGACGGAGCAGTTGACGGCGCCGCTGCTGATGCTGCTGGCGGGGGAGGACGTGGTGACGACGCGGGAGGAGTTCGCGGAGTTCACCGGCGGTCTTGAGCGGGCGGGCAAGGAGTACGAGATGAAGGTGTACGAGGGCGCCCCGCACTCGTTCTTCGACGACAGCGAGGAGGACTGGAGCGAGGCCTGCACCGACGCCTGGCACCGCCTGCTGGCCTTCACGGGAGTGCGGATCGGTGAACCGGCGGCGTGAGGGGGCTGGGGTCGGTGAGGCCCGGCCCGCCGAGGCGAACTCGGCGGGCCGGGCGGGGGAGTTCGGGGGCGTAGGCTTCCGGGGTAGTGATGGCGATGAAGGGAATGCGCCAGATGTCCGAATTCCAAGAAGTTGCGAAATCCGGCTCGCTCGCCGCCTGAACGCGCAGGTCACGAACT # Right flank : TGCCCCACCAGTCTTGCGGTGGGGCGGGGACGGATTGTGGCTTTGGGTGCCTGCGTGGGAAGTCGGATACGCCGACTTCCCACGCAGGACGGCGTGGCGAAGGGCTCGCGTTCCCGTGGGCCGGGTTTCGGGTCTTGGTTCGAGTTGCCCGGCGTAGGAGACGCGCGGGCCCCAATCGCCCGCTGTGGACCTGGACCGGTGCTGCAATAGAGGCGTTGGACAACTTCCAGGTCGGCTGCGGCGCCGACGGGATTCGAACCCGCGGACAGATAGGGACAGGGCCGTCCGTCTCCGTCAGTCGACGTGAGCGGGACCTCGCCCACGTCGATCGCAATGGGCCGCTCTGCCACGGCACCGCAGCCTGCGGGAATGCGCGCTTTCCCGTTCCGGGACACGGTAGCGGGACGGCGTTGGCGTAGCGATGCCTTATCCAGCAGCGACACCCGCTGCCACAGAACCACAGGAGTTGAGCCGAGACCCGGTCGGGCGGCAGTTGTCCA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 310158-309258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODS01000002.1 Kitasatospora purpeofusca strain NRRL B-1817 contig2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 310157 29 69.0 170 ...A..G...A.A.C..CC..A.C..... ACTGCTCTGGCCCAGCATCCGACAACCGCCAAAGGAGACTCGCCATGGGACCTTCAGCGACCGGAAGCCTGACAGCGACCCACACCCTCGCCGGATTGCGAAGAATGCCCAATTCGAAGGAAGTTGCCAAAACCGCCACTCGCGCGTGACAACATCCCAGCTCACGAACT G [310130] 309957 29 96.6 32 ............A................ GCGCGATCGGTGTCCACCGGCGCTCCGTCCGG 309896 29 93.1 32 ............A...............G TAGGTGCCGTCGGCCTGCTGGGTGAAGATCCA 309835 29 96.6 32 ............A................ GTCGCCTACCGCGCCGGGTGGCGCGGCGAAGA 309774 29 96.6 32 ............A................ CCACCGGCCTATACGCCACCGGCGCCCCCTCC 309713 29 96.6 32 ............................T GGTTCCGTATGAGCATCAGCTAGCGCTTGTGT 309652 29 100.0 32 ............................. TCACTTACCGGCCATAGGCCATACGGAACAGG 309591 29 100.0 32 ............................. TGCGCGACGACCGCACCCCCACCGTCACCGTC 309530 29 100.0 32 ............................. GGCGGCCTCACCCGCGCCCAGCGCAAGCACCT 309469 29 96.6 32 .C........................... CGGACGACGGGGATCCCCATGCGGTCCAGCTC 309408 29 100.0 32 ............................. CTTCTGACGTGGCAGCTCGACTCCGATTTCGG 309347 29 100.0 32 ............................. GTGGCGGTGGCGATGCTGGCTCCGGTGCCGCT 309286 29 75.9 0 .....................A.CCAGGA | ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 13 29 93.9 44 CTGCTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : TGCCCGCGAACCTCGAAGCCGGTTTGACGGTCGAGGAGTTGTGCGCGGCAGCGATCCGGTACAGCGACAACGCCGCCGCCAACCTCCTCCTCCGCGAACTCGGCGGCCCTGACGCGCTCACCCGCTTCTGCCGCTCCATCGGCGACCGAGTGACCCGCCTCGACCGCTGGGAGCCCGCCCTCAACTCGGCCGAGCCGAGCCGCCTCACGGACACGTCGAGCCCTCACGCCCTCGGCCGCACCTACGCCCGACTCGCTCTCGGCGCGACTCTCGACCCGGCCGACCGCCAGCGGCTGACCGGCTGGCTCCTGACCAACACCACGGGCACCAACCGCCTCCGCGCCGGCCTGCCACCCACCTGGCACGTCGCCGAGAAGACCGGCACCGGCAGCTACGGCACGACCAACGACGTCGGAGTCACCTGGCGACCGGACGGGCGTCCGATCGTGGTGGCAGTACTCTCCACCAAGCACACCGCCGACGCCCCGGCCGACGAACCA # Right flank : CTCCGCGCTGGACCGGATGCCCCAGCGAAGAATCCGGCCGTCCTCCCGGGCCAGGCCGTCGGTCTCCGCGTGGCCTGGGACTCCTCGGTCTGCGTGAATCCTTGCTCCGCCCCCATCTCGAACGCGGCCCGGACGACAGGCCACGGCTCCGAGTACTGCTTCTGAACCCCGAGGCGCCGGGCCTACCCCGGCTCGCGGGCGAGATCGGCGAGTCCGCCGAGTCGCTATCCAGTGGAATCCGGCTCGCCGAGGCTCGGCTGCGTGGGCTGGCCGAAGTCGGCCATGTCGGGGTCTACCGGCACCGAACCCTGCCGGTCTGGCGAACGATCCGACTCGATACCGCCGTCTACGTCAGCACATTCCACAGCGGTTGGGAGGGCCACGAGTCGGCCACCTATAAGGTACTGGCCACCCCGTACGACCCCCTGTTCGCCGGGTGGCTTCGACAATTCGACGACATGGTGAACGAGGCTGAGCGAATCATTTGACGAAGGAATGGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : CTGCTCCCCGCGACTGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65425-63747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODS01000040.1 Kitasatospora purpeofusca strain NRRL B-1817 contig40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65424 29 100.0 32 ............................. TCCAGGCCGACCGAGATGCCGTCGTTGGCGGC 65363 29 100.0 32 ............................. CACGAACCACCCACCACCCCGATCGGAGCCTC 65302 29 100.0 32 ............................. ACCACCTCGCGGAACTGCTTCACCCGGGCGTC 65241 29 100.0 32 ............................. TCGGTGAATCCGTACCAGGCGTCGGCCCCGAA 65180 29 100.0 32 ............................. CACGGTGCGAGCCGTCTGTCCGCTGCCAACGA 65119 29 100.0 32 ............................. TGGTCGTCCGCGCCCTGCGGGCCTGCGCGCCG 65058 29 100.0 32 ............................. CGGACACACGACCCGTTCGAGGATCTGGCCGA 64997 29 100.0 32 ............................. TCGGCACGGAGACGGCGGCCGCCATCAAGTCG 64936 29 100.0 32 ............................. ACGCCGACCAGCTTCAGGTCCTCCGCGGGGAC 64875 29 100.0 32 ............................. CCTTCCGTGCGCACCCCCGGCACCACCCCCCA 64814 29 100.0 32 ............................. CGCACGGGTGCCCGGGCGGAAGGATCCCGCCC 64753 29 100.0 32 ............................. GCTTCGACCAGCCGGCCGTCAGCCGCCACGGC 64692 29 100.0 33 ............................. AGGGACAGGGCGGCGGCGTCCCCGCGCAGGTCC 64630 29 100.0 32 ............................. CACAGGGCCAGTGCCCGCAGCGCGGCGGTCTT 64569 29 100.0 32 ............................. ACGTTCGTCGTCATCCAGCCCGACGAGGACGA 64508 29 100.0 32 ............................. CTCGAAGGAGATCTGGACCCCGAGCCGGGCCA 64447 29 100.0 32 ............................. ACCGACCAGGCCTCGCAGTAGGAGGCGAGCGC 64386 29 100.0 32 ............................. GACCACACCGTGAGGCAGCGGGAGCACGTCCG 64325 29 100.0 32 ............................. CCGGCCGACGACGGCGCGGTGCCCGGTGACCT 64264 29 96.6 32 ...............C............. AAGCGGGACATCGTCGATTCGACGCGGCTTCC 64203 29 100.0 32 ............................. GCGTTGCCGGGCTTGCCCGTGCTGCTGGTGGT 64142 29 100.0 32 ............................. CCCGTCCTACGCACCTGCGCAGGAGGCCGACT 64081 29 100.0 32 ............................. ACGCAGAACACCGTCTCGGTGGGGACCGTTCC 64020 29 96.6 32 ..........T.................. GTGCCGTCGTACCTGATCGGCGACATGTTCGA 63959 29 96.6 33 ........................T.... CCTGGCCGACGCGCTTGGGGGTGGACTCCTCCA 63897 29 100.0 32 ............................. GGCCGCGCCCTGGTCGCCCGCGCCGACGAGGG 63836 29 100.0 32 ............................. GCCTGCAAGCCGACCGTGTTCACGTCGAACTA 63775 29 93.1 0 ..............C............G. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CGGCGAAGGTGACCGAAATGCCCGAATCTCTGGAAGTCGCAAAATCCCGCCCCACCGTCGGATAGACCCGCAGGTCATCAAC # Right flank : AGCGCCGAGAACGCCCACCGCTGCACCCAGTAGAGCCGGAAGTCCCGCATCCCCCACGGAGGTTTCCCGTCGGCGTCGGGCCGGCCTAGCCGAGGGCGTGCACGATGCCGCCCAGCAGGTGTTCGAGGGCCGCGCGCAGGGGCAGGACGAACGGGCCGGCGGCCACGGCGACGGTCACGGCGAGGGGCAGGCGCGGGGTCTGGCGCCGGTGCGGGAGGATGCCGAGGAGGAGGACCAGTGCGGCGATCACCAGGGGCGGCCCCAGCGCCACCACCCAGGCCGGCAGCGGGCCGAGGGTGACCGGGGAGTTGAGGGCGCCGGACAGGCCGAGCCAGCCGACGGAGAGCAGGAGGCTGAGGTCGATCAGTCGGGGGACGGCCGGGGGGACCCGGACCCGGCCGTCGAGGTTGCGGCGGAACGAGAAGACCATCATCAGCACCATCACGGACAGGACGGCCAGTTCGACGCGCAGGACGCCGGGGAGGTCGGGCGGGGGGAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4344-3684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODS01000065.1 Kitasatospora purpeofusca strain NRRL B-1817 contig65.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 4343 29 100.0 33 ............................. GAGGTCAGGCGCAACGGGCGCCGGCCCCACCAG 4281 29 100.0 32 ............................. CGCGTGGAGTACTTCGTCCGGGAGGCCAGCCT 4220 29 100.0 32 ............................. CGCGTGGAGTACTTCGTCCGGGAGGCCAGCCT 4159 29 100.0 33 ............................. CCACTGCCCAGCCCTGGGCTGCGGCTGGTGCTG 4097 29 100.0 32 ............................. GGGAGCCGCGCGCTCGGCCTGCAGTACGTCCG 4036 29 100.0 32 ............................. AGGCCCGCGCTGACCAGGGCCGGGTACTCGTC 3975 29 100.0 32 ............................. CGGATCCTGTTCGCCTCCGCCCGGCGGCTGGG 3914 29 100.0 32 ............................. GGAGGGTTCCCCACCGAGTGTTGAAGGGCGAG 3853 29 100.0 50 ............................. CTGGCCGCGCGACGGCTGCGACGGCTGCGACGGCTGCGACGGCTGCGCGA 3774 29 100.0 33 ............................. TTGGCGACGACGTCAGCGGGCTTGGCCTTGAAC 3712 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================================== ================== 11 29 99.7 34 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GCCACAACGACCTCCACGAGGGCAACGTGCTCGTCGGCCCCGGTCACGCGACCCGCGTGACCGGCATCATCGACGTCGAGAACGCGATCGCCGCAGACCCCCTGATCGACCTCGCCAAGACCGACTACTACGCCCTCGGCCGCGGCGAACCCGAACGCCAAGCCCTGCTGGAGGGCTACGGTCCACTCCCTCCCGATGCGGCAGAACGCCTCGACCTCTACCGGCTCTACCACGCCCTCGAGTTGTGGGACTGGTTCCGCTCGATCGACACCGTGGGCCCACTGTCCAGCATCGCCGAGGACATCGCCCGGCTGGCCGACCGGCGCTCCGACTCACCTTCGTGACTCGTGCAACTCGCACAGCAAGCGGATACGGAGCCGGTCAGGATGGATAGGCTGACGCTGGTGCGCAGCCCGCCGATGAAGGTGACCGAAATGCCCGAATCTCTGGAAGTTGCAAAATCCCGCCCCAACGCCGGATAGACCCGCAGCTCACCAACT # Right flank : GGCATCAAGGGCCACGCCGTCGCAATCAACGTCTGCCCCCGCACCGGCTGACGAAGTTCACATATGCCGGATGCACGCGGGGCCGTGAGCGAGCCGGCGGCCCCTGTTCTCCGAGTGGCCTCCGAGGTCGGGTTGGCGGCCGAGGTGCCAGTCCTCGTCGAGGCCCACCCGTGACCCGGCCGCCCTTCGGGCCCGACGAACTGTGAGCAGCAAAGGGTCCGGTCCACCCGTTTCCCAAGCCAGAAATGCAGACGGGGTCCAGCGCCTGTGTGGCGCCGGACCCCGTCCGACTGTGGAGCGCCAGGCCCGGGTTGCACGGACTCTTCCTACTGAAAGTAGGACGTGCTCTGGTAGCACCGCTGACGCCTGGCGAGGAATCATCTCCCTCGCGACATCAAGAAGATTAGCAGCTCAGCGCCCATGTTCCGAATCGCGGTCGAGTCATGGCCGAGGTGGAGACGCAGGCCTTCCGGGGACCTCCCTTCGAAGCCTGCACGGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3489-2849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODS01000066.1 Kitasatospora purpeofusca strain NRRL B-1817 contig66.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3488 29 100.0 32 ............................. ACCGGCATGGGCCTCTTGAACGGCATCCGGGC 3427 29 100.0 32 ............................. GGGATCCCGGCGGCCAGGCCGGGCACCGTGGC 3366 29 100.0 32 ............................. AACTCATCGGCGAACAGGATGCGATTCCCCTT 3305 29 100.0 32 ............................. ATGGGCCTCGCCTTGGCGGACTGCTGGATCAG 3244 29 100.0 33 ............................. CTCGCTCTCTCTCAAATCACGAGGTCCTGTGCC 3182 29 100.0 32 ............................. GTGGACAGGCCCGGTCCTCAAGCGCCCGCACG 3121 29 100.0 32 ............................. CGACGCGCCAGAGGGAGGCCGCAGGGAGGCAG 3060 29 100.0 32 ............................. CGGGACGCCAGTGCCTCCGTCAGCACGGCGCC 2999 29 100.0 32 ............................. GAGGGCAAGGGCACCCAGGCCCTCGACCAGGT 2938 29 93.1 32 .........A...........C....... GTCCACGACATGGGCTTCGCCTTCAGGATGAG 2877 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : ACCGGTCCACCCGAGCGCGTGCACGACCCTGCCCGGCGGGTGCCCGGGGGCCGACCGAAGGGGCAGGAGGGGCGAAGAACGCGATCGCCGCTGACCCGCTGATCGACCGGGCCGCGGCCGACCACTACTCCCCTCCGCCGTGGAAACCTGCACGCGACGCATTCTTCGAGGCTATGGCCCACTCCCTGCCGGTAGCGAAGAGCACGTCGACGCCTACCGGCTTTACCTTGGGCTCAAGTGTGGGACTGGCTCCGCTCGATCGGCGCCCTCGGCCTCCTTAACGGCTTCGTCAACGACATTGGCACCCGCCACGCCGCCGTGCCCCGGGCCAGGCGCAGCCCACCCAACCGTGCCGGACGGGGAGCGGAGACGGGGTTGGCCGGATGGTGGGTAGGGTGACCCTGGTGCGCAGCCCATCGGCGAAGGTGACCGAAATGCCCGAATCTCTGGAAGTTGCAAAATCCCGCCCAACCGTCGGATAGACCCGCAGGTCATCAACT # Right flank : TGACGGCCGAGCTTCGCGCGGCCGGCCTCGGACAGGGCGAGGCAGTCAGCGCACCACGGGGATCGCGCCGGACCGCCAGTCGGCGAGCCGCTTGCGGATGCTCGGCACCATCGGCAGCCCGTCCGTCTCGGCCGGGGTGAACCACGCCACCTCGTGGGACTCGTCGGACACCAGCAACTCCCCACCGAGCGGACGCCCAAGGAGGCAGATGCTGAACTCCTGGCGGACCTCGCCGTCGTCGTAGGCGAAGACGTGCCCGGGGTTGGTGTAGGTGCCGACGATGCCGATGATCTCGATGTCGAGGCCGGTCTCCTCGCGGGTTTCCCGAATGCCGCACCCGGCGAGGGACTCGCCGAGGTCCATCTTCCCGCCGGGCAGGGCCCACATACCGTTGTCGGTGCGGCGCTGGAGAAGAACCCGGCCCTCGTCGTCGACCACAACGACGCTCGCGGCCGGGACGAGGCTGTTCGCCTTGGGAGCGTGCGGGTCGTCCTCGTAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //