Array 1 13392-14030 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRN01000004.1 Escherichia sp. MOD1-EC4550 EC4550_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13392 29 100.0 32 ............................. AATGTCTAAATGCACGTTATAGGTCGCTGTTA 13453 29 100.0 32 ............................. ATAATTGCCCCGCCTGCGTTGTTGATCAGGCA 13514 29 100.0 32 ............................. GGAACACTAACAATCACTGATGATGTCGCCGT 13575 29 100.0 32 ............................. AAAGTAAGAAAGGTTGTAGGTTGTAAGTAGCT 13636 29 100.0 32 ............................. CTCACCGACTTCCTGAAATTGGTCAGTAATAC 13697 29 100.0 32 ............................. TTGATTGCGTCGTGGAGGCGCGGTGTCCATGC 13758 29 100.0 32 ............................. CAGGGCTATTCACATCGGCCTGGTTTCAAATA 13819 29 100.0 32 ............................. TCCAGTAATAACAAGAAGTTATCTCTTGTCAT 13880 29 93.1 32 .........G..C................ TAAGATGATCTCACGGAATTGAACGAACTACG 13941 29 93.1 32 .........G..C................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA 14002 29 82.8 0 .........G.AC.......A.......A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCTCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTGGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGGTGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATAATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAACGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTCGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCGTAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39683-41602 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRN01000004.1 Escherichia sp. MOD1-EC4550 EC4550_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39683 29 100.0 32 ............................. TCCGCGTGTCGCGCTGTCGCGCAGCCGGACGA 39744 29 100.0 32 ............................. ATCCCGCAGACTCAAACCGCGTTGATTTAATT 39805 29 100.0 32 ............................. GTCGCCAGCACGTCACAAACGGCAACGCGCTG 39866 29 100.0 32 ............................. CCACTTAACCGAACTTCATCGCAAAACACGCG 39927 29 100.0 32 ............................. AAATCGGCGCGGAGCATTTACGCCCGGAGTTG 39988 29 100.0 32 ............................. TGGATAATCCCCCCCATCCCAGTGGCTACCGT 40049 29 100.0 32 ............................. AGAGGGTTAATTGTCCGCGTTCGTCGGCCAGC 40110 29 100.0 32 ............................. ACATAAACGCCGCGAGAGAGCCAAGGGCCGTT 40171 29 100.0 32 ............................. GTAACCACATGACACGTATCGCCTCTCCATTT 40232 29 100.0 32 ............................. TCGATCTCGCAACCACCGTTGATCTCGCAGAT 40293 29 100.0 32 ............................. CCGACGTACAACTACGGCGGTGTGTCGATTCC 40354 29 100.0 32 ............................. CAGCCGACGCGCAGAAACCTGCCGGGGCGACA 40415 29 100.0 32 ............................. TACGGCACAGTAACAAACGGTTATCAAAGTTG 40476 29 100.0 32 ............................. TTTTTTATTGAGACGCTCCCGGATGAGGTTAT 40537 29 100.0 32 ............................. GGTTGCCTTTAACATACCCTCGCTCATACCCC 40598 29 100.0 32 ............................. TACGCAAACGGCTAGCGATATCGCCTGCTGCG 40659 29 100.0 32 ............................. CCTGAGCAACGCTGGCGGGAAGTAATGGCGGC 40720 29 100.0 32 ............................. ACCGTATTCAGCTATCGCGGCAGGTTTACGAG 40781 29 100.0 32 ............................. AATGCAAATGAAAGTTTTGCTCGCGCGTGTTT 40842 29 100.0 32 ............................. GATGCCGCTGTCGGCAAATGGGGCGGCACTGA 40903 29 100.0 32 ............................. TCCCAGCCCTGTTAGTATTTCTGCCGCCGCAT 40964 29 100.0 32 ............................. TGGAAAGGGCGAACGGTTTGCAGTTCATGCCA 41025 29 100.0 32 ............................. GTAACAGGGCTATTTCCCGAACCTATCGCCTC 41086 29 100.0 32 ............................. GGTTCAACCTGCATTCACCGACGGCCATAAGG 41147 29 100.0 32 ............................. ACACATTATCAATGCTGACCTTCGGGCCTAAT 41208 29 100.0 32 ............................. CATTCGCGCACGCCAGGTTATGACCGGCGAAG 41269 29 96.6 32 ............................T CTGTCTCAACGCTGTAGTGCAGGTTATTTGTC 41330 29 96.6 32 ............................T CTGTCTCAACGCTGTAGTGCAGGTTATTTGTC 41391 29 96.6 32 ............................C TGCGCTGCTTTTTCTTCCGGTGGCACGTCCTC 41452 29 100.0 32 ............................. TCAGCGACAACGTCGCCAGGACGACTACTGCT 41513 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 41574 29 89.7 0 .A...........T......A........ | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : GTGCAGTACGCCTGATGACAAACCAAGCATCGGGAGTTCCCCCGCGTCAGCGGGGGAACTCCCAGCTCCCATTTTCAAGCTCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTATTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //