Array 1 173-2121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVMF010000305.1 Fangia hongkongensis strain FSC776 FSC776_304_len4226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173 28 100.0 32 ............................ CTTCATACGTAAAATAATCTCTAAGATCATCT 233 28 100.0 32 ............................ GTCAATGATACCCTTGCAGTAGGTTGTCAACA 293 28 100.0 32 ............................ GTCTGAAAAAGGGAAGTTAGCTACAATTACGT 353 28 100.0 32 ............................ CTTAACAATTAAATCCATCAACGAGGCGTTGA 413 28 100.0 32 ............................ GCATCACTTAAGATACACTTTAAAAAGCCCCC 473 28 100.0 32 ............................ CACCGAGGGCTGACTTTATCTAATGGGAATTT 533 28 100.0 32 ............................ TTATTGTTAAAGGGCTCAGCCAGTATCTCTTA 593 28 100.0 32 ............................ TCATGATCTTCTTATTAACGTTGATTATATTG 653 28 100.0 32 ............................ AATCTGAGTAAGGAGATAGACATGAGATTCAA 713 28 100.0 32 ............................ CAAAGGACGGGGGATTGTCAGACGTGGTGGAA 773 28 100.0 32 ............................ TAGTCAAGAAGAAGCTATTGCGTAATTGATTA 833 28 100.0 32 ............................ ATTGTATGTAAAGTTATCTTTAATTAAATCGT 893 28 100.0 32 ............................ ATATACTTCTTTAGCTGCGTCAAGATATGATC 953 28 100.0 32 ............................ AGATTCTTGGTTATACGGAACTATACTTATAT 1013 28 100.0 32 ............................ ATTATATACATAGATACCACTGTGTCAACAAA 1073 28 100.0 32 ............................ TACCAGTTGAAGTATCTCCGGTATGTCCTCCA 1133 28 100.0 32 ............................ AGCTTATTGCGCTTAGGCATAATGACGGTTTC 1193 28 100.0 32 ............................ ATATCAGCAGCAATTAGCAGCTTAATAGCGTA 1253 28 100.0 32 ............................ ACTCATTTTTATCTAGATCTGCTAAAGCTCTT 1313 28 100.0 32 ............................ TCAATTAAAAAGTCAATATCCTGCTCACCATC 1373 28 100.0 32 ............................ TCAAAGACATTAGTTGAAGCCCAGTTGCTACC 1433 28 100.0 32 ............................ TCTATCTTTTCATGAGACTTCTTTGCGATTTT 1493 28 100.0 33 ............................ TCATCATAGGATCGAGTAACCGTTTGATTGGCT 1554 28 100.0 32 ............................ TTCACCCACATCTTCTTTTTCGCCCACCCAGT 1614 28 92.9 32 ...........T.T.............. TTTAAAAGACATCAAGGCTCCGCAAGGATTGC 1674 28 92.9 32 ...........T.T.............. CAACTGACATAGCCCTCTACCTCTGGCGCAAA 1734 28 92.9 32 ...........T.T.............. TCTTCTTTGTACTTTTCGCTGTGTTTTCTCTA 1794 28 92.9 32 ...........T.T.............. TCGCCATCATGATATTTGACGTTGAGTGATTC 1854 28 92.9 32 ...........T.T.............. ATGCCCTTTAAGCTTGTGGTCATATTAAGATA 1914 28 92.9 32 ...........T.T.............. TAAAGTAGGAAGGCCATCAGCAGCATTATAAA 1974 28 92.9 32 ...........T.T.............. TCGATAAAGAAATCAGGCGAGCTAAAAGTGCC 2034 28 92.9 32 ...........T.T.............. TGCAATTAATACAGGGGTATTGACTGGAAAGA 2094 28 96.4 0 ................A........... | ========== ====== ====== ====== ============================ ================================= ================== 33 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTATGGTCTAAGCAAAACTGCAACGGTCCCAATATTTTAACCTTTATTTTTGGAAGGTTGAATCAGCTCTTTAAAAATCAAGCATCTAGAGTTTAAGTAAAATTATTGGTGTTTTTATACAAATCGCCCTTAAACGCTGACTATTACTGTATTTATGGGTATAATTTTACTG # Right flank : AGGTTGTAGAAATCATATAATATTCATGAGTTTTTCACCACCGCATAGAGTGAAAACGACTAATGCATTGCGCTAAAGCAATGCGCGTTTGAGGGCCATTTGTTATGGATTTTCAAATTGAGTGCTTCCCCTTTAAGGCATGGATAACCGAAAAGGGAAAGGCTTAGAAATATCAGCTCTCTTTTTGAGTCACCAACATCCCCTTTTGCACCGCTTCTCTTTGCGCTACTTCATTTGCCCATCTGATAAGCGATGGATAGCTTTTCACATCTAAAAACCTCGCTGCTTCATAGACTTTATTCAGCACAACACCGCCATACCATGGGAAAATAGCAATATCGGCAATGGTGTATTGATCCCCACAAATATACTGATTGTTTTTAAAATGCTGATTTAACACATCCAGCTGCCTTTTTGCCTCCATGGTAAAGCGATCAATACAATACTCGATTGGCATCGGTGCATATTTATAAAAATGACCAAAACCTCCGCCTAAATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //