Array 1 145609-139405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBGB010000010.1 Gordonia hydrophobica strain WS3307 Ga0467032_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 145608 37 100.0 39 ..................................... TTCCGCAATCAGTACGCGGTACCCGTCGACCGGACGCCG 145532 37 100.0 39 ..................................... AGCCTCCGCAAATGGACGCGGCTTGCCGCCGCCGGTAAC 145456 37 100.0 35 ..................................... GGCGGAATGACGCTCGGAGACCTCGAAGCATTCGT 145384 37 100.0 34 ..................................... AGGATATCGTTAACCGACGCACAACGACGCTCAA 145313 37 100.0 34 ..................................... CCGAGACGGGTCACGCCAGCGACAGTGAGACGAA 145242 37 100.0 40 ..................................... AGGGTTGGTGTGGGGTCAGGAGCGGAACCCGGCCTAGCGG 145165 37 100.0 37 ..................................... CGGTCGAGATAATCGACGCCGGTCACAAGGGCTCCTT 145091 37 100.0 38 ..................................... GCGATGGAGCTGAACCAGCTCGCGGACCGCGGCATCCC 145016 37 100.0 36 ..................................... TGGTCGGTGCATTGCCTGGCAGCGGTGTCTCCGGCG 144943 37 100.0 35 ..................................... CAGGACTTCCGACGCCAGCGCCCGCGAGTCTTTGC 144871 37 100.0 38 ..................................... TCTAGTTTACTTGGCGGTACTGCGATCCACTTGTTCGG 144796 37 100.0 35 ..................................... GGCTCATCATCCACCAAAACATCCACCGGATCACG 144724 37 100.0 38 ..................................... GTGAATAGTGGCGCGAAGGGTGGCCGGAATGGCGGTCG 144649 37 100.0 33 ..................................... TCCTTGACACCGTTGCTCCGCCGCCGCCAAGCG 144579 37 100.0 36 ..................................... TTGCCGCCACCAAAGTTCAGGTGGTTGCGGTACGGC 144506 37 100.0 40 ..................................... CGGTCGAGATAATCGACGTCGGTCACAGTGGTTCCTTCGC 144429 37 100.0 35 ..................................... TGTGAAGCGAGTCTAGTGCGCCTAGTGACGTACTC 144357 37 97.3 36 ..........T.......................... GTGGACGCCTTGACCCCGAACTGCGACTCGAGTCCG 144284 37 100.0 38 ..................................... GCAGCGGTGCCGTCTCGGTCAAATACAGTTCGGGAATG 144209 37 100.0 39 ..................................... GACACCCGCCGAAAGATAACGAGCGGTTATTGGTTCGAA 144133 37 100.0 41 ..................................... TGAATGGAAACTCGGTGACGCTTCCCGCGGTCTCGTGGCGG 144055 37 100.0 37 ..................................... CCTCATCCTGCTCGGGGTGGGTGTTCCGGCGGGCGGG 143981 37 100.0 37 ..................................... TTCGTGCGGGGTCTGACCGCAGACGCTAGCGGGTCGA 143907 37 100.0 40 ..................................... AAGCTCGAAGAAGCGTTGCGCGTCCTCAACGAAAGAACAG 143830 37 100.0 40 ..................................... TGGGACTCGATCCGGCCGCGTCGCTCGAACTGATGAAGAA 143753 37 100.0 36 ..................................... CTGACTGCTGCAACATTCAAGGACAATCGCGAAGAC 143680 37 100.0 38 ..................................... CGCCGCCCGCCAGTGCGGCGCGGACGAAGTCGACGAGG 143605 37 100.0 35 ..................................... GTCATCACCCAGAGTGAGTACTCGGGTACGTTCCA 143533 37 100.0 38 ..................................... GCCAAGTTTTACGATCACCTAGGCGTTGATTGTCTTGG 143458 37 100.0 38 ..................................... GGGCTAAGTCGAACCCGATGCCCGAGAGCGTCACCGAC 143383 37 100.0 37 ..................................... GACGGCGCGTTCGCCGAGGTCGGGGTGGATGCGTGCT 143309 37 100.0 38 ..................................... CGGATCGGGCCTGTCGACAAGACGAACCCGCGGATCGA 143234 37 100.0 37 ..................................... AAGCTCGTCACCGATGAGCCCGACTTCTTGCACCTGC 143160 37 100.0 39 ..................................... GAAATCCAGGCACGCCGCTACGAACTCCTATGGGCGGAG 143084 37 100.0 37 ..................................... TCCTTGAGTCGTTCCTGTTCTACAGCGGGTTCGCGCT 143010 37 100.0 41 ..................................... CGGGTGCGGGACTCGATGAGATCGCAGTCCTCCGACTCGGC 142932 37 100.0 37 ..................................... TACGAGACCGGCGACATCCGCCTCTACCTCGGCGACT 142858 37 100.0 38 ..................................... TTGTGTGCGATCCACGCGAGCAGCATCATCACGACCAG 142783 37 100.0 41 ..................................... CCAGACATGACCGCACTCACCGTGACCGGCCTCGATCTCTC 142705 37 100.0 38 ..................................... GGCAGTCAAGGCACCAGCCACCACCGACGAACCCGACG 142630 37 100.0 37 ..................................... CCTCCAACTCATCCGCGCATGGTGCATCGCCCCACGG 142556 37 100.0 35 ..................................... CGCTGCTTCGATCTCGTCCCACGTGACGTCTTCGC 142484 37 100.0 39 ..................................... TCAACGTCCAAACCAAGCAGGCCCGCATCGTCAAACCAG 142408 37 100.0 39 ..................................... GAGTTTCTGGCTGGCCCAGTACGTGCTGACGATGGCGGT 142332 37 100.0 36 ..................................... TCGATCATGCTGCACCTGCCTCAATGCGACGCTTTG 142259 37 100.0 35 ..................................... ACCAACTCGCGATATCCGCGGCCCGTCGCACCTGG 142187 37 100.0 38 ..................................... CTCTCAGCATCGTCCGGGTGTGGCAGTTCTCCACTCCA 142112 37 100.0 35 ..................................... CGCTGCAGCGGAAGCCGCGGCCGCGAAGGACTCCG 142040 37 100.0 38 ..................................... TGCGCCCCGCACACGCACCGCGTCGAGCTTCTCGATTG 141965 37 100.0 35 ..................................... AGCGTGAACCGTAGGTGGTTGCCCTCGTCGTCGAC 141893 37 100.0 34 ..................................... GTGACGTGGCCTGATCTTGCTGGGTTTATGGCTA 141822 37 100.0 40 ..................................... TCGCGCACCAAGATCGAGTGCGCGTCGGTATCGGAGTCGG 141745 37 100.0 38 ..................................... TGGAGGTCGCCGCGGGCATCAGGATCGTCACGTGTCGG 141670 37 100.0 39 ..................................... TGCGGGGACTTTGCCTGATGGCACGAATGTGGAGATGGG 141594 37 100.0 36 ..................................... TGATCGACACGCCTTATCCCCCGTACGTCATCGAGG 141521 37 100.0 39 ..................................... CGGACTTGGCGTGAACCTGAAACAGGCCGTCCCACAGCG 141445 37 100.0 36 ..................................... CTGGAACCGCTATCCCAGCTCGCAGCGAAGCACGAA 141372 37 100.0 40 ..................................... AGGTTGATGTTGCCGTCGAATACGCGGATTCGTGGACCGG 141295 37 100.0 38 ..................................... CGATCCGAGACGTAGGCGTCGAACGCCTTGCCCTGCAC 141220 37 100.0 38 ..................................... AGGAATTTCTCTCGCCCAGGCGTGCCCGTCTGGATGCG 141145 37 100.0 33 ..................................... CGAGCACCGGGCCGACCTCGGAAACGTTCTTCA 141075 37 100.0 37 ..................................... CGCGGTGCAGCCTGGCGCGGCCGGGTCCGTCGTGGGT 141001 37 100.0 34 ..................................... ATCCTGAAAGGTAATGATCCTTCACTGGCCGCGG 140930 37 100.0 40 ..................................... AGGAAGCGTTCGCGACCAGGCACACCAGACTGCCGTCGCT 140853 37 100.0 37 ..................................... CCGTACGGCGCGCCGGTCACGCCGAGCTGCTGCTGGA 140779 37 100.0 36 ..................................... TTGGTAGTAGGCACTCTCAATGTGTGTGAGAATAAA 140706 37 100.0 40 ..................................... ACCGCGAACGGCATCAGCGCCCGACACGACCGCGTGACCG 140629 37 100.0 34 ..................................... AACAAACACAAGGCCGCCGCCCACTTCGCGCCAG 140558 37 100.0 37 ..................................... TCCAGGATCGCGGTGTCGAGCCTGTCCTTGGCTGAGA 140484 37 100.0 35 ..................................... TGATCAGTCTCGGTGGACTGTGACCGGGACTTTGC 140412 37 100.0 38 ..................................... CGCAACCGCATGGCCGAGCACGAGCTGCGCAGCATGCG 140337 37 100.0 35 ..................................... TGGAAATGGAAGAACGCGGGGTGGCGTCTCTCGAG 140265 37 100.0 39 ..................................... CGTGCGGTGATCGTCGAGAACGTCGTCGACGCCGCCAAG 140189 37 100.0 40 ..................................... GCGGGCGATCACGTCCATCATCCGAGCCTCGGCAAGCGGA 140112 37 100.0 37 ..................................... AACATGGAGTTCCTTTCAGGAGGCTCTGCGGTGTCGG 140038 37 100.0 39 ..................................... ATGGCGGCGTTCATCGGGGTTTCGTCGGTAAAGCCGGAG 139962 37 100.0 39 ..................................... CTGGTCAATCGGGCCGCGTACACATCGAGATTCGGACTG 139886 37 100.0 34 ..................................... GCGACCGGCAGCATCCTCGAAGGCATCGGCCAAA 139815 37 97.3 38 ....................................C GAAAGGATTTGACATGAACAAGTTTGAGCGAGCAGCAA 139740 37 97.3 38 ....................................C CGGTCTCGCCGACCGTCGCGCCAGACTCGCCCGATGCA 139665 37 97.3 37 ....................................C GAGGGACAGACGGAACTAAGCAACGGCACCGGCGAGA 139591 37 97.3 39 ....................................C TGGTCGATGAGCCATCGGTTGATGGCATCCATGTCGGGC 139515 37 97.3 37 ....................................C AACGGCGGCCCTGGTGGTGGTCATACTGCGGGCACGA 139441 37 89.2 0 .........G.......G.................AC | ========== ====== ====== ====== ===================================== ========================================= ================== 84 37 99.7 37 CCTTCCGCGACTTCGGTCGCGGAACCTTCGTTGAGGG # Left flank : CGGGATTCGGACGCGATGACTCCGTCTACGAGAAGGCTGTTGGTTGCGTACGACATCGTCGATGACCTCCGCAGAACGAAGCTCGCCAAGGTGCTCCAGTCGTACGGCGACCGTATTCAGTACAGCGTATTCCTGATCGACCTGACCGCAGCCGGGGAAGTGAGGTTGCGTCGCGAGGTCGCTAAGACGATCGATGCGCAAACTGACTCAGTTCTGTTCTGCGTCGTTGGTCTCAGTAGTGGTGGTAGAGACCCCGTTTTGAGCTTCCTCGGCCGTCGCAGGCCGACTCCGGACGAGATCGAGTTCATCGTGTGACAGGACGTCGCGAGAGCGCCGAACACATTGGCAAGTCACGGCCACGTCTCGCGTTGGGAAACGCCTGGTCAGACCTAACTCGCGCTGATTCGCGGTTTCGAGACGGCAGCCGCCTGGCGTGTCCGCGGGTACCGCTCGCGAAGGCCATGGAAAGTGCAGGTCAGAGCTTGTGTATTCTGGGGGCA # Right flank : GCTGGAATCTCCTACACGACGACTGACTCTTACGGCACCTTCCGCCCACACAGCGCAGGTCCCGTCGCCGCACGCCATGCGGACCAACAACAAAGTCGGCAGGAGAGTCAACCTGCACAATTCCGGTCTGGGTAAGGCCGAGCTGTCGGACCTCGACGACCCTCGGATCGTGAAACTGCGTTTCGCAGGCCGGGTTTCCCTCGACCACCGAACACGGCGTCACGTCGTTGTCCGGCGCGTTCGCCGAAGTCGAGAAGGTGCCTACCTCACGCATGACTGACGACGTGTTGGAACGCGCGGTCGTGGCGTTGGGGCGGGCGACCGGCGTCATTTCGGATGCGCTGATCGGGGCGCGGGAAGCGTAGATGCGACCACGGTCGGCGCACTGGGGTGAGCGTGCAGATCGTCCAGCGGCTCCGGTAACTTGCTGCCGAGAAGGGCACGAGCTCGCTGAGGAATAGCAGGGCACCGTCACGCGCTGTAACGACCGTGAAGAACAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGCGACTTCGGTCGCGGAACCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //