Array 1 17571-16810 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNE01000002.1 Escherichia coli strain YH17155 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17570 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 17509 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 17448 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 17387 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 17326 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 17265 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 17204 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 17143 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 17082 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17021 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 16960 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 16899 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16838 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCANTCCCCGCGCCAGCGGGGATAAACCACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9134-10504 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNE01000027.1 Escherichia coli strain YH17155 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9134 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9195 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9256 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9317 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCG 9378 29 96.6 32 ....................C........ GAAAATGCTCTTTCAAAATGCAATGCCCCGCG 9439 29 96.6 32 ....................C........ GAAAATGCTCTTTCAAAATGCAATGCCCCGCG 9500 29 100.0 32 ............................. TGAACACACTTCCAAAATTCAACGGTGACGCC 9561 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9622 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATCCAATGCCCCGCG 9683 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9744 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 9805 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 9866 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 9927 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 9988 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 10049 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 10110 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 10171 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 10232 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 10293 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 10354 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10415 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10476 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGACGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //