Array 1 59370-58487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWOQ020000008.1 Escherichia sp. 0.2392 0_2392_8_length_205105_cov_42.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59369 29 100.0 32 ............................. TCAGCGGCGGTGATCCCTGAGGTACCAAACAT 59308 29 100.0 32 ............................. AAACAATGGTTATTGCGTTTTCCTCACCTGCG 59247 29 100.0 32 ............................. ACAATTCACATAGTAGCGATTCAGCCGGATTA 59186 29 100.0 32 ............................. GCGGCGCGCCACCATTACGGCAAACCTGAACG 59125 29 100.0 32 ............................. TGCCGCCAGGCTTGCGACACGTCAGACAACTG 59064 29 100.0 32 ............................. ATCGAGTACCACAAAAAATATACTGAGTGAGT 59003 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 58942 29 100.0 32 ............................. GGCTATTGGGTTATTAAAGACCTGAATGAAAC 58881 29 100.0 32 ............................. ATATCGCGCGGGTCGCTAATTTTTTTACCCCG 58820 29 100.0 32 ............................. CCCGCGCGCGCTCTTCGCGCCAGTTAGCAACA 58759 29 100.0 32 ............................. GACAAACTGGCGATATTAATGATTTTTTTCCT 58698 29 100.0 32 ............................. CCGGATTAATAACTGGCAACATGCCGCGCAAT 58637 29 100.0 32 ............................. AGTTCGGTAAGTATCGTGGATGTAGCTGTAAT 58576 29 100.0 32 ............................. CAAAACCAATAGGTGCTTTCCACATTGCAGAA 58515 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAATTGCTAGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGACGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CTCTCGGTTCTGGGGTACTGTTACCCATAACTGAGCTCCCCCGCGTCAGCGGGGGAACTCCCAGCTCCCATTTTCAAACGCCTCATGACGCCTTCACCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTATGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 85842-85141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWOQ020000008.1 Escherichia sp. 0.2392 0_2392_8_length_205105_cov_42.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 85841 29 100.0 32 ............................. CCATTTAGGATCATTCATCGACAATTCTCAAA 85780 29 100.0 32 ............................. ATTGGTAACTACGGCACAAAACAGGAGCACAG 85719 29 100.0 32 ............................. GGATAGTCCTATTCAAATCGGATTATCACCAC 85658 29 100.0 32 ............................. GGCGCACGCGCGAGGATATGTAGTCTAACAGC 85597 29 100.0 32 ............................. ATTTTCGCGGCGGGTAGTCGAGCCCGGCGATC 85536 29 100.0 33 ............................. GTAACTGGCGTGACCGTCAAATGAGCGGCTTGC 85474 29 100.0 32 ............................. CCACTTAACCGAACTTCATCGCAAAACACGCG 85413 29 100.0 32 ............................. AAATTTATCATCATTGTGGTGCTCTTAGTTAT 85352 29 100.0 32 ............................. CATCACTGGACGCCCATTTGAATAACTCACAG 85291 29 100.0 32 ............................. ATTCAGCAAATAGCGAATTTCATAAATATGAT 85230 29 96.6 32 .T........................... TACGTTAAACGCCATCTGTCATGGGTCGTCAT 85169 29 93.1 0 .T..........................A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATCTTAAACATTTACCTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATATGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //