Array 1 975904-976542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057565.1 Escherichia fergusonii strain RHB23-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 975904 29 96.6 32 ........T.................... GTTTTAGCAATTTGCGCCCATCCTGTAGAAAA 975965 29 96.6 32 ........T.................... GCTCGGGAATAATCGAGTACGCCAGGAGTATT 976026 29 96.6 32 ........T.................... CCAGTGGATTTTAATAAACTCTCAAGCGAGCA 976087 29 100.0 32 ............................. ATGACGTTAGTAAACAGCTCGCAGCACAACGC 976148 29 100.0 32 ............................. TCCGCTGACAGCGCCTTATCATTCACTTTTCG 976209 29 100.0 32 ............................. CCCGTTTAGTGTTATTATCGTGCTGATAGAGT 976270 29 100.0 32 ............................. TAACATGTCATCATAAATATCAGCGCGTCTCA 976331 29 96.6 32 ...........................T. ACGACGACGGCACACGAGCGGTTAATCCCGAC 976392 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 976453 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 976514 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAATGTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAGCATGAAATATATGAGCTGGTGAGTTATAAAGATTATCTATACTCAACAGACCATGAACCTATTGATTTTCAAGAGGGAGTATTACGATTTCAACAAATTAGAACAAAATACAGGTAAGAGCTAAAAGAACTCGGTTAACCTGTAGGTAATTAAGAAATATTGTTTTTATGTTGGGGAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATATTTTTATTTTATTCTCGAAAATGCCTAATTTCATTAAATACGTTATCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGTCTCCCTCGATTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCTGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 991498-992319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057565.1 Escherichia fergusonii strain RHB23-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 991498 29 100.0 32 ............................. AATCGTTATCCGGCAACATATCAAGCTGGGAA 991559 29 100.0 32 ............................. ACAGTGAAATCTATTGGGATAACATAAAATCG 991620 29 100.0 32 ............................. ATTTCATGTTTGCTGCCTGCAAACATTTTAAG 991681 29 96.6 32 ............................A AAAACCTAAATTATATGGCGTGCGAATTTAAC 991742 29 100.0 32 ............................. ATCATATATTCCGAATTAATGCTGGTGCCGTC 991803 29 100.0 32 ............................. AACCTTTGCCGCATAGGAAACCAGCCCACCGA 991864 29 100.0 32 ............................. AGTTCATCAATTACAGAGTCGGGAACTGGACA 991925 29 96.6 32 ...........................T. CGTTTCATTTGCTGTAGAGACGGTTCTTGAGT 991986 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTATTGAGGCGCGTAT 992047 29 100.0 32 ............................. AAACGCCGTGGTGTGCCGCGTTCGCCGGAGCT 992108 29 96.6 32 .............T............... TTGACGATAAACAGTTTGCTACCTTGCTTGAA 992169 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 992230 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 992291 28 79.3 0 .A..........T.........-.CT..C | C [992296] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAACGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //